Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2994 ATGGATTTTCTTTCCTTTTTCCGCATTTCGTTCAAAGGGTTGAAGGGAGATAGAGGAATTCACTATGACACGTTTACTGAGAAAAATCCTTTTTTAGCCAATCATCTATTAAGAAAAATAAAAAAGCTTAACACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCTAGATCATCTACCATTATCCCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAACATTTACCTATTTATATAACAGATCGTACGGTAGGCCATAAATTAGGCGAATTTTCACCCACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGGTCTCATCGTTAA 342 0.345 MDFLSFFRISFKGLKGDRGIHYDTFTEKNPFLANHLLRKIKKLNTKAEKEIIITWSRSSTIIPTMIGHTIAIHNGKEHLPIYITDRTVGHKLGEFSPTLNFRGHAKNDNRSHR* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2994 113 SUPERFAMILY Ribosomal protein S19 27 106 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 Hamap 30S ribosomal protein S19 [rpsS]. 10 110 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 TIGRFAM rpsS_bact: ribosomal protein uS19 27 112 IPR005732 GO:0003735|GO:0006412|GO:0015935
Amo13g2994 113 PRINTS Ribosomal protein S19 family signature 54 73 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 PRINTS Ribosomal protein S19 family signature 74 86 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 PRINTS Ribosomal protein S19 family signature 86 101 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 25 113 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 ProSitePatterns Ribosomal protein S19 signature. 74 98 IPR020934 GO:0003723
Amo13g2994 113 Pfam Ribosomal protein S19 27 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo13g2994 113 PANTHER 37S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL 25 113 - -
Amo13g2994 113 Gene3D 30s Ribosomal Protein S19; Chain A 25 113 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2994 Amo-Chr13 76126747 76127263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2994 27 99 Cytoplasmic Ribosomal Protein Gene Family AT5G63070 36.842 1.56e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2994 K02965 - fve:10251561 165.236