Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2988 ATGGAGAGAGAGGATGAAGATGCGACGCAAGAGAGGAGGCTATTCCGCCGTGCACTGTCATCGCTCCTGCGGTCGATTGAAGCCACCGCCGCATCTAGGGCTTGCCGGAACAATGCTGATCGATTCCTGAATTGGAGCACTAGGTTCCAAATTGTTCTAGGCGTGGCAAGGGGATTGGAGTACCTTCATGAGGATTCAAATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATAATAAGTTTCATCCCAAGATTGGAGACTTTGGCCTTGCCAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAATTTGCTGGAACATTAGCTGGGCTTTCTGGCATGTCAACTATAGTGGAACTCTTGGATCAAGGACACGAGAATACTGGAACTAATTTGCTTCAATGGCCAGTGGAAGAAATAGAGAGCTTGAGACTTAGTAGTGATGAATTTAAGGAATTATTGGTTAGACCTGGCACAGTAGTGCCATTACACATTGGCCCTGCAACACAGGATTTTTCCATAGTTATTGGCATGTTAAGCATATCATCTAATTCACTTGTGGCAATGACTTCTCAGCTTTCTAAGCCTTTGAGAATAGGCAACGGCCGAATAGGAATCACCCCAAAAAGCGTAGCCGTAGCCCAAAAACGCTTATTGGGAGGCAACCCATTGTTATTTAATTATATCTATTTATTTTTCATTGCTATTTTATGTTTTCTTTAG 741 0.4318 MEREDEDATQERRLFRRALSSLLRSIEATAASRACRNNADRFLNWSTRFQIVLGVARGLEYLHEDSNLRIIHRDIKASNILLDNKFHPKIGDFGLARFFPEDQAYLSTQFAGTLAGLSGMSTIVELLDQGHENTGTNLLQWPVEEIESLRLSSDEFKELLVRPGTVVPLHIGPATQDFSIVIGMLSISSNSLVAMTSQLSKPLRIGNGRIGITPKSVAVAQKRLLGGNPLLFNYIYLFFIAILCFL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2988 246 Pfam Protein kinase domain 50 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2988 246 SUPERFAMILY Protein kinase-like (PK-like) 40 114 IPR011009 -
Amo13g2988 246 Gene3D Transferase(Phosphotransferase) domain 1 21 127 - -
Amo13g2988 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672|GO:0006468
Amo13g2988 246 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 38 115 - -
Amo13g2988 246 SMART tyrkin_6 1 160 IPR020635 GO:0004713|GO:0006468
Amo13g2988 246 ProSiteProfiles Protein kinase domain profile. 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2988 246 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 38 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2988 Amo-Chr13 75698313 75703453 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2988 43 114 Receptor kinase-like Gene Family AT1G70530 68.056 3.64e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2988 Pkinase 1.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2988 - - ahf:112703114 169.859