LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g2932	ATGGTAGCTTATGCAAATAGCCACACTTTCACCAGTGTCCCACACGCTGTCCGGCAGAGGAGGAAAGAGAAGGAGTTGTATAATCGATTGGGGAGCAAGGGCATCATCAAGCGGAATGACCCTCACGTTTGCAGGGTTTGTGGGAGAAAGTTTTACACTAATGAGAAGCTTGTTAACCATTTCAAGCAGCTATACGAGAGCGAGCAAATGAAAAGGGTGAACCATATAGCATCGGCAAGGGGGAACCGAAGGGTGAAGTTGGTGGCAAAGTATTCGATGAAGATGGAGAAGTATAAGAAGGCTGCAAGGGATATTCTTACTCCAAGGGTGGGGTATGGTTTGGCGGATGAGTTGAAACGCGCAGGATTTTGGGTTCAGTCCGTGTTGGATAAGCCACAAGCTGCAGATCATGCATTGGAAAGTCACATGGTGGATATGATGGATCATAGGTGGGTTGAATGCATAGTACTTGTGTCGGATGATTATGATTTCGCTAATGTAATAAGGGAAGCGAAGCTACGATGTCTAAAGACAYTTGTCATCGGGGATACTAGRGATGGTGTATTGAAGAGGATTGCTGATACCTCCTTTTCTTGGGAGGAAATCCTAATGGGGAAAGCTAGAAAGGAGGCTATATCGGTTGTTGAGAACTGGAAGGATGTGATATTTTGA	672	0.4524	MVAYANSHTFTSVPHAVRQRRKEKELYNRLGSKGIIKRNDPHVCRVCGRKFYTNEKLVNHFKQLYESEQMKRVNHIASARGNRRVKLVAKYSMKMEKYKKAARDILTPRVGYGLADELKRAGFWVQSVLDKPQAADHALESHMVDMMDHRWVECIVLVSDDYDFANVIREAKLRCLKTXVIGDTRDGVLKRIADTSFSWEEILMGKARKEAISVVENWKDVIF*	224

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g2932	223	ProSiteProfiles	Zinc finger C2H2 type domain profile.	42	70	IPR013087	-
	Amo13g2932	223	CDD	PIN_LabA-like	52	183	-	-
	Amo13g2932	223	PANTHER	-	1	220	-	-
	Amo13g2932	223	Pfam	NYN domain	114	194	IPR021139	GO:0004540
	Amo13g2932	223	PANTHER	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN	1	220	-	-
	Amo13g2932	223	Gene3D	-	6	203	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g2932	Amo-Chr13	68221468	68224401	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g2932	1	220	C2H2 Transcription Factor Family	AT4G12240	61.818	7.48e-102	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Amo13g2932		NYN	5.7e-06	CL0280

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g2932	-		-	ahf:112726816	415.616