Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2918 ATGGGAAATGTTGTGATTTGGTTTCAGATACATGAAGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGAGGTGGACATTCTCGTCGCAAATCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTTGA 258 0.438 MGNVVIWFQIHEEARKFAYQTGVKVVVAYGGAPINHQLRDLEKEVDILVANPGRLVDLLERARVSLQMIRYLALDEADRMLDMGF* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2918 85 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 85 IPR014001 -
Amo13g2918 85 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 85 - -
Amo13g2918 85 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52C 8 85 - -
Amo13g2918 85 Gene3D - 6 85 IPR027417 -
Amo13g2918 85 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 85 IPR027417 -
Amo13g2918 85 Pfam DEAD/DEAH box helicase 8 85 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2918 Amo-Chr13 66346480 66346889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2918 9 85 Eukaryotic Initiation Factors Gene Family AT3G13920 37.662 2.10e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2918 K11594 - aip:107633234 170.629