Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2908 ATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATATGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATACGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTAATTCAGTTCCACCGCCATGTGAGAGTCCATATGAAGAAAGCAAGGCAGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCCATGCAATCAATAATCTCTATATGTCAGATATTCTTGAAGAATCTGAAATGGCTGTGCTTCATATTGAGAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCGGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCAGAATCTCTCCTAGCAGCATTCAATAAGGAAGAGGAAAACTTGGTTCCAATGTGTCTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTTGTCAGCTGCCAAGTGTGTTTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAAATTGTCCAATTTTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTGAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATAGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTCGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATAGTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTCGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGATTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCATTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGTGAGAATGGGGAAGTGCCATCTCTCATTTGTTTCAAGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTATTGGAAAGGCAGCAATTCATTGTGTACAAGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAATTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGGTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCAATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGGGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAGGCATGGAGAGTAAATTAA 2916 0.4198 MQPNLKEFRGSPEYHMAEYDNPPPGTAKNMPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPNSVPPPCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRHAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPMCLKPKTAALLLFAQVIGSSEERIALSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQFFSELIKLNRRTLNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGIVFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMIALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVPSLICFKNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKLLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLVGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQAWRVN* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2908 971 ProSiteProfiles Trp-Asp (WD) repeats profile. 937 971 IPR001680 GO:0005515
Amo13g2908 971 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 970 - -
Amo13g2908 971 Gene3D - 655 785 IPR015943 GO:0005515
Amo13g2908 971 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 970 - -
Amo13g2908 971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 107 IPR013083 -
Amo13g2908 971 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 728 761 - -
Amo13g2908 971 SUPERFAMILY ARM repeat 189 674 IPR016024 -
Amo13g2908 971 Pfam U-box domain 32 102 IPR003613 GO:0004842|GO:0016567
Amo13g2908 971 SMART WD40_4 929 969 IPR001680 GO:0005515
Amo13g2908 971 SMART WD40_4 841 887 IPR001680 GO:0005515
Amo13g2908 971 SMART WD40_4 679 716 IPR001680 GO:0005515
Amo13g2908 971 SMART WD40_4 721 760 IPR001680 GO:0005515
Amo13g2908 971 Pfam WD domain, G-beta repeat 725 760 IPR001680 GO:0005515
Amo13g2908 971 Gene3D - 786 971 IPR015943 GO:0005515
Amo13g2908 971 ProSiteProfiles U-box domain profile. 30 105 IPR003613 GO:0004842|GO:0016567
Amo13g2908 971 CDD RING-Ubox_PUB 35 77 IPR045210 -
Amo13g2908 971 ProSiteProfiles Trp-Asp (WD) repeats profile. 728 761 IPR001680 GO:0005515
Amo13g2908 971 SUPERFAMILY WD40 repeat-like 695 970 IPR036322 GO:0005515
Amo13g2908 971 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 937 971 - -
Amo13g2908 971 MobiDBLite consensus disorder prediction 1 29 - -
Amo13g2908 971 SUPERFAMILY RING/U-box 31 107 - -
Amo13g2908 971 SMART Ubox_2 34 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2908 Amo-Chr13 65156952 65162813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2908 32 112 U-box Gene Family AT3G46510 50.617 1.55e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2908 - - gmx:100808867 1488.4