Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2882 ATGGCTCTTGCTTCAAGAAAAATGCCATTACTTCGTACACCTACTTCTTCTTTCACTATCACATCTTCTGTGTTATTCTTTCTGGTGGCGGTGGCGTTTCTTGGTGGTGCTGATGGCGGTGCTTATTTCGCTGGATCAGAGTGTCTCAAAGTGTCTCCTTCTGAATTTGTTGTGTCAGTGAGAGATGTGGTTGATGTGTTGCAAGGGGTTATGTCCATTCTAGCTGAGTTCAACAATGGCGGATTCGGTGATGATTTTCGTGTCTCTAATGCCGTTTCTGACTGTGTCGATTTGCTTGACTTGTCCTCTGATGAGCTTGATTGGTCTGTTTCCGCCACTCAGAAACCCCAAGGGAAGCATAACAGTACTGGGAACCTAAGCTCAGATTTAAGAACATGGTTAAGTGCAACGCTGGCGAATCCAGAAACATGCATGGACGGATTCGAAGGAACTAATAGCATGGTTAAGGGTCTAGTTTCCACTGGCTTAGTCCAAATGATCTCACTGGTTCAGAACCTACTAACCCAAGTGGACCCGGTTCCGGATCACTCCTTCTCCACCAAACATGGGAAGTTCCCTGCATGGGTCAAACCAAGAGATAGGAAGAAGCTTCTGGAAGCGAACAACAAGGGCGTGGGCGTGTTCGCCGACGCGGTGGTGGCCGCCGATGGCACTGGGAATTACACAAAGATAATGGATGCTGTGAAAGATGCACCTAATTATAGTATGAGTCGGTATGTGATATACATAAAGAAGGGTGTTTATAATGAGAATGTTGAGATTAAGAAGAAGAAGTGGAATCTTATGATTATTGGAGATGGCATGAATAACACCGTTATTACCGGTAACCGCAGTTTTGTTGATGGTTGGACCACTTTCCGGTCAGCCACTTTTGCTGTGAATGGTAGAGGATTCATAGCAAGAGACATCGCTTTCCAGAACACAGCAGGGCCGGCGAAGCACCAAGCAGTGGCGCTAAGATCCGACTCGGACCTTAGCGTTTACTACCGATGTGGTATCTTTGGTTACCAAGACAGCCTCTACGCCCACACAATGCGTCAATTTTACAGAGAATGCAAAATCACTGGCACCGTTGACTTCATCTTTGGCGATGCGACTGCGATTTTCCAGAACTGCCAAATCCTCGCTAAAAAAGGCCTACCGGATCAAAAGAACACCATTACGGCGCACGGCCGGAAAGAACCGACCGAGCCAACCGGTTTCTCAATACAATTTTCCAATATAACAGCAGACTCCGACCTTGCGCCGTTGATCAACACTACTCACACGTACCTTGGTAGGCCATGGAAGCCATATTCAAGGACAATTGTGATGCAATCTTTCATTAGTGATGTGCTGAGGCCGGAAGGGTGGCTTGAGTGGAGTGGCAATGTTTCTTTGGACACGTTGTATTATGCCGAGTACATGAATCATGGGCCCGGATCTGGGCTTTCTAACCGCGTGAAATGGCCCGGGTACCATGTCATGAATGATTCTAGCCAGGCTAGTAACTTCACTGTCACACAATTTATTGAGGGAAATCTTTGGTTACCTTCAACGGGTGTGGTGTTCACTGCTGGCTTAGGAGTTTAA 1593 0.4689 MALASRKMPLLRTPTSSFTITSSVLFFLVAVAFLGGADGGAYFAGSECLKVSPSEFVVSVRDVVDVLQGVMSILAEFNNGGFGDDFRVSNAVSDCVDLLDLSSDELDWSVSATQKPQGKHNSTGNLSSDLRTWLSATLANPETCMDGFEGTNSMVKGLVSTGLVQMISLVQNLLTQVDPVPDHSFSTKHGKFPAWVKPRDRKKLLEANNKGVGVFADAVVAADGTGNYTKIMDAVKDAPNYSMSRYVIYIKKGVYNENVEIKKKKWNLMIIGDGMNNTVITGNRSFVDGWTTFRSATFAVNGRGFIARDIAFQNTAGPAKHQAVALRSDSDLSVYYRCGIFGYQDSLYAHTMRQFYRECKITGTVDFIFGDATAIFQNCQILAKKGLPDQKNTITAHGRKEPTEPTGFSIQFSNITADSDLAPLINTTHTYLGRPWKPYSRTIVMQSFISDVLRPEGWLEWSGNVSLDTLYYAEYMNHGPGSGLSNRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVVFTAGLGV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2882 530 CDD PMEI-like_4 19 177 - -
Amo13g2882 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 179 IPR035513 -
Amo13g2882 530 SMART PMEI_2 52 176 IPR006501 GO:0004857
Amo13g2882 530 Pfam Pectinesterase 217 514 IPR000070 GO:0030599|GO:0042545
Amo13g2882 530 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 50 182 - -
Amo13g2882 530 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 187 528 - -
Amo13g2882 530 Pfam Plant invertase/pectin methylesterase inhibitor 90 167 IPR006501 GO:0004857
Amo13g2882 530 PANTHER PECTINESTERASE 50 182 - -
Amo13g2882 530 PANTHER PECTINESTERASE 187 528 - -
Amo13g2882 530 Gene3D - 213 528 IPR012334 -
Amo13g2882 530 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Amo13g2882 530 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Amo13g2882 530 SUPERFAMILY Pectin lyase-like 216 527 IPR011050 -
Amo13g2882 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 174 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2882 Amo-Chr13 63474919 63479321 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2882 22 528 Carbohydrate Esterase AT3G43270 61.185 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2882 K01051 - gmx:100801813 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2882 13 63474919 63479321 Amo13g2882 13 63474919 63479321 ECH