Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2881 ATGGCTAGAACCCCGTTATTATTCACTTCATTGTCATTGCTTTTCACTCAGTTCCTATTCACCCCATTTGATGCTGTTCTTGGTTCAAAAGGATCACTAGAATGCCTTAAAGTTTCTCATGCCGAGTTCACTAACTCAGCTAAAGAAGTTGTTGGTGTCTTGAAAAGTGTTACATCCATTCTAAATTCTGAGTTTGTTAGAAATGGCGGAGGCTTTGTCGATGATCATCGCCTTTCGAGCGCTGTTTCAGCGTGCCTTGAGTTGATGGACTTGTCCTCCGATGAGCTCAGCTGGGTTGTGTCCGTTTCTGAAAGTCCCAAAGGCAAGCATAACGGCACTGGTAATTTGAGCTCTGATTTGAGGACATGGCTAAGTGCTGTTCTTGCCAACACAGACACATGCATGGAAGGATTAGAAGAAGGCACCACAAGCAGTGTCAATAATATAAAGAATGCAGTAACCGCTTCCATCAACAAAGTGAACACAATGGTCCAGGATCTCCTAACACAGGTGCACCCTGTTTCGTATAACAGGGTGAGCAAGAGCAAACTTGAGTTTCCTTCTTGGACCGAATCAGAGGATCTTGAGGGTAAAAAGTTGCTAATGGCGGTGGATGCCGTGGTGGCTTTGGATGGGAGTGGGAACTACACACGTGTGAAGGATGCTGTGGAATCAGCGCCCGAGTATAGCATGAAACGTTATGTGATACACATTAAGAAAGGTGTGTATAGTGAGAAAGTTGAGATCCATAGCAAGAAGTGGAACCTTGTGATGATTGGAGATGGAATGGAGAATACTGTTATCACTGGTAACTCGAGTCGTTATTTCCATAATATCACCACATACCGGACTGCAACCTTTGCTGTGGCAGGCAGAGGGTTTATAGCACAAAACATTTCCTTCCATAACACTGCAGGGCCAAGAGGGAGCCAAGCAGTAGCTCTAAGATCACAATCCGATCTCTCAGTCTTCTACCGCTGCGAAATCTCCGGCTACCAAGACAGCCTCTACGCCCACTCCAACCGCCAATTCTACCGAGAGTCCATCATCACCGGCACCGTAGACTTCATCTTCGGCCGCGCCGCCGCAGTCTTCCAGAACTGCACCATACTTGCCAAGAAAGGCTTACCGGAACAAACCAACACCATAACCGCTCAAGCCGCAAAGGACTCCACCTCACCCTCCGGCTTCTCCATCCAATTCAGCAACATCTCTGCACATTCTGAACTTCTACCTTTCTTGAACTGCACAAGAACGTACCTTGGGAGACCATGGAAGGCATATTCGAGAACGGTTTTCATGCAATCTTACATGAGCGAGATGGTGAGCCCGCAAGGGTGGAAAGAATGGAATGACACGTTGTATTTGGACACACTTTACTATGGTGAGTTCATGAATTATGGGCCTGGATCTGGGCTTTCTGAGAGAGTGAAGTGGCCTGGGTATCATGTTATCAATGACTATGATGAAGCTAGTAACTTCACGGTGGCCCAATTTATTCTGGGGGATCTATGGTTGCCATCAACGGGTGTGAATTATGCATCTCGTTTCACTAAATAG 1560 0.4654 MARTPLLFTSLSLLFTQFLFTPFDAVLGSKGSLECLKVSHAEFTNSAKEVVGVLKSVTSILNSEFVRNGGGFVDDHRLSSAVSACLELMDLSSDELSWVVSVSESPKGKHNGTGNLSSDLRTWLSAVLANTDTCMEGLEEGTTSSVNNIKNAVTASINKVNTMVQDLLTQVHPVSYNRVSKSKLEFPSWTESEDLEGKKLLMAVDAVVALDGSGNYTRVKDAVESAPEYSMKRYVIHIKKGVYSEKVEIHSKKWNLVMIGDGMENTVITGNSSRYFHNITTYRTATFAVAGRGFIAQNISFHNTAGPRGSQAVALRSQSDLSVFYRCEISGYQDSLYAHSNRQFYRESIITGTVDFIFGRAAAVFQNCTILAKKGLPEQTNTITAQAAKDSTSPSGFSIQFSNISAHSELLPFLNCTRTYLGRPWKAYSRTVFMQSYMSEMVSPQGWKEWNDTLYLDTLYYGEFMNYGPGSGLSERVKWPGYHVINDYDEASNFTVAQFILGDLWLPSTGVNYASRFTK* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2881 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 172 IPR035513 -
Amo13g2881 519 Gene3D - 201 517 IPR012334 -
Amo13g2881 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 165 IPR035513 -
Amo13g2881 519 SUPERFAMILY Pectin lyase-like 202 513 IPR011050 -
Amo13g2881 519 Pfam Pectinesterase 205 503 IPR000070 GO:0030599|GO:0042545
Amo13g2881 519 CDD PMEI-like_4 18 175 - -
Amo13g2881 519 SMART PMEI_2 26 170 IPR006501 GO:0004857
Amo13g2881 519 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Amo13g2881 519 PANTHER PECTINESTERASE 181 515 - -
Amo13g2881 519 PANTHER PECTINESTERASE 38 176 - -
Amo13g2881 519 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 181 515 - -
Amo13g2881 519 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 38 176 - -
Amo13g2881 519 Pfam Plant invertase/pectin methylesterase inhibitor 45 155 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2881 Amo-Chr13 63359801 63363776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2881 33 513 Carbohydrate Esterase AT3G43270 55.422 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2881 K01051 - qsu:112004696 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2881 13 63359801 63363776 Amo03g1629 03 44826536 44842508 hybridization
Amo01g2672 01 97531865 97534926 Amo13g2881 13 63359801 63363776 PCT
Amo13g2881 13 63359801 63363776 Amo01g2672 01 97531865 97534926 PCT