Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2879 ATGTCTTTGAGATTCAAAATTCACTATATAAAAGAGCATGCATCTAATGTTCATACGTCTATCTTTCTACACATCACTTCTTCCAGTTTGAAAAAGTGTCAAAGGCTAGCTGATTGTAGTGGTTTTCCGTTTATCAAACTAACCATGGCTGAATCGTTTGATATGTTGATGGACGTCAGTCCGAAAAAACTTGCATGGAACTTCTTGGTCTATGTTGTTCGTTTGTGGGAAGCTCCTAGCCGGTACAATCCTAAAGAGATCAATAGCATTGAAATGGTTCTTCAAGATAGTCAGGGAGGGAGGATCCAAGCTTCGGTCCCTAAGGCGTTGGTACGTAGATGGAATGATAACCTTGCTGAGTTCAAGATGTATAAAATGTCAAATTTCATTGTTGTAGACAAGAGGGAGAAAACCAAGACAACTATGAATCGGTGGACCTTAAACTTCTCTCACCGAACTGTGGTGCTCTTGGTGGAGAATCCAACTTTCCCACTTCAAGCGTTTCGATTAACGCAAATTTCAGAGTTGTTGAATGCTGACAGGATCGATGACTCTCAATTAGTAGATATTATGGGTAAAGTGGTTGGAAAGGAAGATCCCAGGGAACTCATCACAAGCAAAGGGAAGGAAACGAAGTGTCTAGCTATTTTGGTTGAAGATCTTGATAATTATCGTATTGGGTGTGTGTTGTTTGGGGACATGGTTGATCAAATACTACCATACCTAGATGATGGAAGAGTTGAGCCATTGATAGTGGTCCTGCAGTTCTTCCGACCGAGTAGATGGAATGAGAAAACCTCAGTACAGAGTCATTTCGACGTTTCTAAGCTACGCATCAATCCCGATCTCGATGAGGTTCGCGACTTCCGTGACAGGAGGCTTGCCGCTATACCCTCAAATTTGGTCAGAATTAGTCAAGTCAACACAAACAACTCACATTCTGGGGCAGATGAACTTAAGCGGGGAGATGTGACGGTGAACACAATAGAGGAAGCACTAAACTCAACACAGGAAGGCCCTTTGTGGATTGCTGGAACAGTTGTGGCAATCAATTCTGGCAAGGATGATTGGTTTTACAAATCATGTAAGAAGTGTCCGAAGAAGATTGAAACACCAATTGGAAATAGATACGAGTGTGGAAAGTGTGGCCACACTCACGGAAGTGCATCACTAAGGTTTAAGGTTGAGGTGATGGCCTATGATTGCACTGGTAGCATAACACTGCTTCTATGGGATCGAGAAACAGTTCAACTATGTGGTAGACAAGCAGAACAGATCAAGGATGAGGAGGAACTTTATGCTGAAGGATACCCTGCAGCTCTTGAGAGCCTTTTAGAAAGAAAACTGCTTTTTAAGGTGAATGTCAAATCCTCCAACATCAAGCTCTATGACCAGGTGTATACAGTGATGAAGGTCTGCGAGGATGATACAATTTTTGAAATGCATCTCCCAAATAAAACGTTCTCCACTGTAACTGATACTGGGTGCAGTAACTCGGTGGATTTGTCAGCAGCTATGGTTAATATCAACAATCTTAGTGATTCTCAATATTCTGTGGATGTTGTGGAGGATAGTGTTACAAGCCTCAAGTGCAAAACCCCAGCAAAAACAGCTACCATGGTTTTAAACCAACAAATTCCCATCAACATTGAGAATGAAGAAGAACTGGGGTTTTCAACCAACAAACTTACCCGCAATCGTGGAAAGAGACAGAAGATGCAAGTTCATGATAATAATGAATGA 1743 0.4177 MSLRFKIHYIKEHASNVHTSIFLHITSSSLKKCQRLADCSGFPFIKLTMAESFDMLMDVSPKKLAWNFLVYVVRLWEAPSRYNPKEINSIEMVLQDSQGGRIQASVPKALVRRWNDNLAEFKMYKMSNFIVVDKREKTKTTMNRWTLNFSHRTVVLLVENPTFPLQAFRLTQISELLNADRIDDSQLVDIMGKVVGKEDPRELITSKGKETKCLAILVEDLDNYRIGCVLFGDMVDQILPYLDDGRVEPLIVVLQFFRPSRWNEKTSVQSHFDVSKLRINPDLDEVRDFRDRRLAAIPSNLVRISQVNTNNSHSGADELKRGDVTVNTIEEALNSTQEGPLWIAGTVVAINSGKDDWFYKSCKKCPKKIETPIGNRYECGKCGHTHGSASLRFKVEVMAYDCTGSITLLLWDRETVQLCGRQAEQIKDEEELYAEGYPAALESLLERKLLFKVNVKSSNIKLYDQVYTVMKVCEDDTIFEMHLPNKTFSTVTDTGCSNSVDLSAAMVNINNLSDSQYSVDVVEDSVTSLKCKTPAKTATMVLNQQIPINIENEEELGFSTNKLTRNRGKRQKMQVHDNNE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2879 580 SUPERFAMILY Nucleic acid-binding proteins 328 482 IPR012340 -
Amo13g2879 580 PANTHER REPLICATION FACTOR A 1, RFA1 70 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g2879 580 MobiDBLite consensus disorder prediction 559 580 - -
Amo13g2879 580 CDD RPA1_DBD_A_like 70 155 - -
Amo13g2879 580 Pfam Replication factor-A C terminal domain 345 474 IPR013955 -
Amo13g2879 580 SUPERFAMILY Nucleic acid-binding proteins 169 292 IPR012340 -
Amo13g2879 580 Gene3D - 53 156 IPR012340 -
Amo13g2879 580 Gene3D - 162 296 IPR012340 -
Amo13g2879 580 CDD RPA1_DBD_B_like 189 293 - -
Amo13g2879 580 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 70 415 - -
Amo13g2879 580 CDD RPA1_DBD_C 326 484 IPR013955 -
Amo13g2879 580 Gene3D - 304 481 IPR012340 -
Amo13g2879 580 Pfam Domain of unknown function DUF223 91 172 IPR003871 -
Amo13g2879 580 SUPERFAMILY Nucleic acid-binding proteins 56 161 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2879 Amo-Chr13 63295388 63298205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2879 43 455 Core DNA Replication Machinery Family AT5G08020 21.053 9.20e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2879 - - aip:107630584 1152.12