Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2877 ATGACGAGAACACAAGAATTAGTGATGATGATAACCTTTTTAGTGTTGGGATGTGCACTAACCATGGCAGAAACAGCAGCTCTAGAGCATGCTCATCACTATGAATGCACTCATACCAGATACCCTAGTCTATGTGATGAAACCTTGAAGGAGTTGATGAGTTCAGGGAATGATAAAAATGTTGATATCATTCTGGCTCTTGTAAACAAAACCATATCTGAAACCAACTTGCCAAGATCATATTTTGCTTCATTTGAGACTCAGGATATTGCTCAACAAGACAAATCATCTTCATCAGTCGGAGGTTATTGTCAAGAGCTAATGGACATGTCAATGAAGAGGTTGGACCAATCCATGAAAGCACTGAGCAAGCCAACAAGAAACAAGGAGGACATCCAAACGTGGCTAAGCGCTTCCCTAACTTTCCAACAAACTTGCAACGACTTCGTACGATCACAAACCTCCAGCGGCGCCGCCACTGCCGTGGTAGACACCATTTCCAAGAAGATGGACTATCTTTCCGCATTAGCCAGTAACTCACTTGCCCTGGTTAACCAAATCACCACGAAGCGAAAAGAAAAGGAAAGCAAAGAGGAATTTCCCGAATGGATTTCTTCGAAAGCAAGAAAACTCCTTCAGGGAGCAGCACCCATAGAAGCGAACGCGGTGGTTGCGCAAGACGGTTCAGGGAACTACAAGACGATTTCTGAGGCCATTGCAGCTGCCACAGCAATGATGGGGGATGGATTCATTGCAAAAGACATAGGTTTCCACAACAACGCAGGCCCACAAGGCGAACAAGCCGTGGCTCTCTACATAGCTTCAGATCGCTCTGTCCTCTTCCGATGCAGCATTGCAGGCTACCAAGACACCATCTACGCCCACTCCCTCCGCCAATTCTACAGAGAATGCGACATCTACGGCACCATCGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAAACCTGCAACATCATGCTCCGCCGCCCTCTCCACGGTGGCTCCAACGCCGTTCTCGCCAACGGAAGAACCGATCCTGGACAGAACACAGGTTTCTCGCTTCACAAGTGTGCCATAACACCAAGCTCCGATTTGTCTCCTGTGAAGCACTCTGTTAATTCTTATCTTGGGAGGCCCTGGAAGGAGTATTCTAGGGCCGTCGTGATAGGGTGTACCATAGACGACGCCATTGCGCAGCAGGGTTGGGTTCAGTGGCCTGGTTATGGAAGCTCGGTCTTGAGGACACTCTATTTTGGTGAGTATGGTAATTCAGGACCTGGTGCTGGAACTGCAAGAAGGGTTCAGTGGCCTGGTTTTCATGTCATGGGTAATGTTGAGGCTTCTAAGTTCACTGTTGGTAACTTTATTGCTGGAAGTTCATGGATTCCTTCCTCCGTCGGTTTCATCTCGGGTCTCTAA 1422 0.4817 MTRTQELVMMITFLVLGCALTMAETAALEHAHHYECTHTRYPSLCDETLKELMSSGNDKNVDIILALVNKTISETNLPRSYFASFETQDIAQQDKSSSSVGGYCQELMDMSMKRLDQSMKALSKPTRNKEDIQTWLSASLTFQQTCNDFVRSQTSSGAATAVVDTISKKMDYLSALASNSLALVNQITTKRKEKESKEEFPEWISSKARKLLQGAAPIEANAVVAQDGSGNYKTISEAIAAATAMMGDGFIAKDIGFHNNAGPQGEQAVALYIASDRSVLFRCSIAGYQDTIYAHSLRQFYRECDIYGTIDFIFGNAAAVFQTCNIMLRRPLHGGSNAVLANGRTDPGQNTGFSLHKCAITPSSDLSPVKHSVNSYLGRPWKEYSRAVVIGCTIDDAIAQQGWVQWPGYGSSVLRTLYFGEYGNSGPGAGTARRVQWPGFHVMGNVEASKFTVGNFIAGSSWIPSSVGFISGL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2877 473 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Amo13g2877 473 CDD PMEI-like_3 36 189 - -
Amo13g2877 473 Gene3D - 242 473 IPR012334 -
Amo13g2877 473 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Amo13g2877 473 PANTHER PECTINESTERASE 9 243 - -
Amo13g2877 473 PANTHER PECTINESTERASE 241 472 - -
Amo13g2877 473 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 241 472 - -
Amo13g2877 473 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 188 IPR035513 -
Amo13g2877 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Amo13g2877 473 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 9 243 - -
Amo13g2877 473 SMART PMEI_2 27 183 IPR006501 GO:0004857
Amo13g2877 473 ProSitePatterns Pectinesterase signature 2. 306 315 IPR033131 -
Amo13g2877 473 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 187 IPR006501 GO:0004857
Amo13g2877 473 Pfam Pectinesterase 241 459 IPR000070 GO:0030599|GO:0042545
Amo13g2877 473 SUPERFAMILY Pectin lyase-like 218 465 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2877 Amo-Chr13 63223286 63228219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2877 10 473 Carbohydrate Esterase AT2G45220 37.786 1.59e-103 317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2877 13 63223286 63228219 Amo03g1618 03 44294829 44299502 hybridization