Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2839 ATGGATAGACAATATGATTTGTTAGAGATGATTGCACCGTCAAAAGAGAGCTGGAAGATTCATATCAGAGTAATCAGACTCTGGTCTTTACCAAAATTCAAAGACTCCAAATCCAATAGCTCCATTGAAATGGTGTTGATGGATGAGCAGGGAACAACTATGCATGCTTCTGTAGGTGAGGATCTAATATCTGTGTTTCAATCATTGATATCAGAAGGAACTATGTATGTTTTTACATACTTTGGAGTTAGCAATGACTGTCGGTTGTATCGCATAACATCGCATCAATTTCGGTTGTTTTTTCAAGATAGAACTACTGTCTTACCCTCTTTCTGTGATGCAATACCGTTATATGGTATTAAGTTGGTCCCTTTTAGGGAAATTATGGGATACTCTTCTCATCATCCTTTTTTGGTTGACGTTGCTGGAGTTATGACCGGTATAGAGAGTGAGAGAAAATATGTGAACGATGGCAAACTTATTAACATGATAGTCATTCATATTGAGAATGACGGTTTAAAGCTTAATATTGTTGTTCTTGGAGAGATGGTGGACCGGATCAAGGATTTTCTGGCATCGGGCGATCAACAACTGCCAATAGTTGTTTTTCAATTTGCAAGAGTAAAAAATGCTGGGAACATTATGTATGGTAATAGACTCTTGATAAATCCGGATATTCCTGAGGCTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACCTATCTGTGATTTCTGGCAAACCGGCATATCTTGATGAAGATAAGGTTTTATATTCCACTGGGAGGAAGACAATAAATGAGTTACGTGCGGTTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTCTTTGCAGCGTGAAGGTAGAAGCTAATGCGGATGAATACTTCTGCGACGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGTATGACTCTAATTAG 990 0.3919 MDRQYDLLEMIAPSKESWKIHIRVIRLWSLPKFKDSKSNSSIEMVLMDEQGTTMHASVGEDLISVFQSLISEGTMYVFTYFGVSNDCRLYRITSHQFRLFFQDRTTVLPSFCDAIPLYGIKLVPFREIMGYSSHHPFLVDVAGVMTGIESERKYVNDGKLINMIVIHIENDGLKLNIVVLGEMVDRIKDFLASGDQQLPIVVFQFARVKNAGNIMYGNRLLINPDIPEALMLRKREISQYLSVISGKPAYLDEDKVLYSTGRKTINELRAVADVGFYVVRATVLDVEPVPSWWYKSCLCSVKVEANADEYFCDGCNRDVNNVVDRYDSN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2839 329 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Amo13g2839 329 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 326 - -
Amo13g2839 329 Gene3D - 4 109 IPR012340 -
Amo13g2839 329 PANTHER REPLICATION FACTOR A 1, RFA1 20 326 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g2839 329 CDD RPA1_DBD_A_like 19 107 - -
Amo13g2839 329 SUPERFAMILY Nucleic acid-binding proteins 261 326 IPR012340 -
Amo13g2839 329 Gene3D - 114 240 IPR012340 -
Amo13g2839 329 Gene3D - 255 328 IPR012340 -
Amo13g2839 329 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Amo13g2839 329 SUPERFAMILY Nucleic acid-binding proteins 120 235 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2839 Amo-Chr13 62000030 62004535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2839 1 326 Core DNA Replication Machinery Family AT5G61000 21.591 1.80e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2839 - - ahf:112765919 606.675