Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2807 ATGAAGGCTCCTTCCAATGGTTTCTTGCCTAATTCTGGCGAAGGAGAAAAGAAAACAATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCATTGGTTTCTTTACCTCCTATTGGAAGTCTTGTGGTTTATTTCCCTCAAGGACACAGCGAACAAGTTGCAGCATCCATGCAAAAGGAGGCCGACTTCGTACCAAGTTACCCGAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGTCCTTCATGCTGATCCTGAAACTGACGAGGTTTATGCTCAAATGACCCTTCAACCTGTAAATAAATATGATAAGGAAGCAATACTGGCATCCGACATGGGTCTCAAGCAAAACCAGCAACCTACTGAATTCTTTTGCAAAACTCTCACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCCGAAAAAATATTCCCACCTCTGGACTTTTCGATGCAACCTCCGGCTCAGGAGATTGTTGCGAAGGATTTGCACGATAGTACATGGACATTTAGGCATATTTATCGCGGACAACCAAAGAGGCACTTGTTGACTACCGGATGGAGTGTCTTTGTTAGCACGAAAAGGCTATTTGCTGGAGATTCTGTTCTTTTCATTAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGCGCGCTAATAGGCAGCAGCCGGCACTCTCTTCATCGGTAATATCCAGTGACAGCATGCACATTGGCATTCTTGCTGCTGCAGCCCATGCTGCTTCAAATAACAGCCCTTTTACCATATTTTATAACCCAAGGGCAAGCCCCTCGGAATTTGTGATTCCGTTGGCCAAGTACAACAAGGCCATGTACACTCAAGTTTCTCTTGGTATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCTGGAGTACGCAGATATATGGGTACAATCACCGGCGTTAGTGACTTGGATCCGGTCCGATGGAAAAACTCACAGTGGCGCAATCTTCAGGTTGGTTGGGATGAATCAACAGCTGGGGAGCGCCCAAGCAGAGTTTCGATCTGGGATGTTGAACCAGTAGTTACTCCTTTCTACATTTGTCCTCCTCCATTTTTTAGGCCGAAATTCCCAAAGCAACCAGGAATGCCAGAAGACGAGTCTGACATAGAAAATGCTTTTAAGAGAGCTATGCCCTGGCTTGGAGATGAACTTGGCATGAAGGATGCTTCAAGCTCAATCTTTCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGCAGAACAATCAGTTTGCCGCCACCCAATCCGGATTTTTCCCGCCATCTATGCTTTCATCCAATACCCTCCATGGCAACCTTAACAGTAATGATCAATCCAAGATATTGAACTTCCAAGCCCCGGTCCTCTCTGCACCAAATCTTCAATTCAACAAATCTAATCTACCCAACCAAGTCAACCAACTGCAGCAATCTATGACATCATGGCCCCAACAGCTGCAGCAGCCACAGCAGCAGCAGCAGCAGCAGAAGCTGCATTCATTGTTGCAATCGCCAGTAAACCAGCTTCAGCCACAACAGCAGCAGCAACAGAGGCAACAGCAGCTGCCAGAGCCACAAAACTTGTCGCAGTCACAGCAACAACAGCCCCAACTGCCTCAACAGAGAACACAGCAGCTGCAACAACCACAGCAGCAGCCGCCTCCACCACAGCAACACCAACCTCAACAGTCATGTCAACAGCCAATTATGAATAATCGGGTAGTTACTTCTAATCAATGTGTTCAAGTTCAACAACCGGTAGCCTATTCTCAGCTTCAGCAACAGCAGTTAGTCTCCGGAAGCATGCCGACGCAACAAAGTATCCAACCTGCCAACAAGAATGCAATGCTAATGACATCCTTGCCATTAGACTCGCAATTTCAGCAACCGATAGATCAGCAAACTAGTCTCTTACAGAGGCAGCAGCAACAACCGACACAGTTGCAACAATCTCCATTGCAGTTTTTGCAACAAAGCACGTCGCAGAGGGCATTGCAGCAACTTCAAGGGACTCAAATGTCACAGCAAAACCCCTCAGAGCAACAGTTACAGTTACAGCTGCTGCAGAAACTGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACTTATTTCAACATCTAGTCCACTTTTGCAGTCACAGCTTCTGCAGCAAAAAAATACTCATCTGGCAAACCAGCAACTACCACAGCTGCCTCAATCGCAGCATCAACCTCAACAGCTCGGAAATAATTCATTCCCAATGGAGAAGCTTCTCAACAGCAACAGCTTCTCTTCTTCGTCTCTAATGCAATCGCAACAGCTTTCGGTGAACCAACCAACCCTGAATGCACAGAAATCAGTTATAACTAGTAGAGCTCCTTCTAGTCTTACCGATGTAGACGTGCCATCATGCTCGACTTCACCGTCTACTAATACCTGCCAGATATCTCCACCAAATCTCATGAAAAGAAATCAACAAGCACCAACCACATTCGGGGGGATTTCGGTAGTTGAGCCGACTAATAATTTGGTGCAAGAGCTTCATAATAAGTCTGATATGCAGATAAAACATGAATTATCCGGCATAAAAGGGCCTGACCAGCTTAAGTATAAAGGCACAATCAGTGATCAGCTGGAAGCTTCTTCGTCCGGAACATCTTACTGTATTGATCCGGGTAGCATCCACCAGAACTTCCAACTTCCAAACTTCTGCATGGATGGTGATGTTCAATCGCATCCTAGACAAAATCTACCATTTGCCTCCAATCTTGATGGACTAGCAGCGGATACCATGCTCTCAAGAGGTTATGACTCTCAAAAAGATCTTCAAAACTTGCTGGCTAACTATGGTGGTGCTCCAAGAGACATCGAAACAGAGCTGTCCACTGCCGCCATCAGCTCGCAGTCATTTGGGGTGCCAAACATGCCTTTCAAGCCTGGTTGCTCAAGTGATATTCCCATGAACGATGCTGGGGTTTTGAATAATGGCTTATGGGCTAACCAGACTCAGAGAATGCGAACATACACTAAGGTTCAAAAATGTGGTTCTGTTGGAAGATGTATCGACGTCACGCGATACAAAGGATATGATGAACTCCGCCACGATTTGGCTCGAATGTTCGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACCGAGTGGAAACTAGTATATGTGGATCATGAGAATGACATTCTTCTTGTTGGTGATGACCCGTGGGAAGAATTCGTAAGCTGTGTTCAGAGCATAAAGATATTGTCGTCCGCCGAGGTGCAACAAATGAGTTTGGATGGGGATTTAGGCCAAGTTCCAATCCCTAATCAAGCATGTAGTGGCACGGAAGGTGGCAATGCATGGAGGGGACAGTACGACGATAACTCTGCCGCCTCATTTAATCGATAA 3417 0.4603 MKAPSNGFLPNSGEGEKKTINSELWHACAGPLVSLPPIGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVVLHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDVEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQQNNQFAATQSGFFPPSMLSSNTLHGNLNSNDQSKILNFQAPVLSAPNLQFNKSNLPNQVNQLQQSMTSWPQQLQQPQQQQQQQKLHSLLQSPVNQLQPQQQQQQRQQQLPEPQNLSQSQQQQPQLPQQRTQQLQQPQQQPPPPQQHQPQQSCQQPIMNNRVVTSNQCVQVQQPVAYSQLQQQQLVSGSMPTQQSIQPANKNAMLMTSLPLDSQFQQPIDQQTSLLQRQQQQPTQLQQSPLQFLQQSTSQRALQQLQGTQMSQQNPSEQQLQLQLLQKLQQQQQQQQQQQLISTSSPLLQSQLLQQKNTHLANQQLPQLPQSQHQPQQLGNNSFPMEKLLNSNSFSSSSLMQSQQLSVNQPTLNAQKSVITSRAPSSLTDVDVPSCSTSPSTNTCQISPPNLMKRNQQAPTTFGGISVVEPTNNLVQELHNKSDMQIKHELSGIKGPDQLKYKGTISDQLEASSSGTSYCIDPGSIHQNFQLPNFCMDGDVQSHPRQNLPFASNLDGLAADTMLSRGYDSQKDLQNLLANYGGAPRDIETELSTAAISSQSFGVPNMPFKPGCSSDIPMNDAGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQVPIPNQACSGTEGGNAWRGQYDDNSAASFNR* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2807 1138 Gene3D - 289 360 - -
Amo13g2807 1138 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo13g2807 1138 Gene3D - 1006 1100 - -
Amo13g2807 1138 SMART B3_2 126 228 IPR003340 GO:0003677
Amo13g2807 1138 MobiDBLite consensus disorder prediction 1116 1138 - -
Amo13g2807 1138 MobiDBLite consensus disorder prediction 798 825 - -
Amo13g2807 1138 Pfam AUX/IAA family 1008 1097 IPR033389 -
Amo13g2807 1138 CDD B3_DNA 125 217 IPR003340 GO:0003677
Amo13g2807 1138 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Amo13g2807 1138 PANTHER AUXIN RESPONSE FACTOR 19 1 1125 - -
Amo13g2807 1138 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1125 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo13g2807 1138 Gene3D - 123 227 IPR015300 -
Amo13g2807 1138 SUPERFAMILY CAD & PB1 domains 1025 1089 - -
Amo13g2807 1138 MobiDBLite consensus disorder prediction 645 666 - -
Amo13g2807 1138 MobiDBLite consensus disorder prediction 741 761 - -
Amo13g2807 1138 ProSiteProfiles PB1 domain profile. 1011 1104 IPR000270 GO:0005515
Amo13g2807 1138 MobiDBLite consensus disorder prediction 488 559 - -
Amo13g2807 1138 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Amo13g2807 1138 MobiDBLite consensus disorder prediction 488 576 - -
Amo13g2807 1138 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2807 Amo-Chr13 59595806 59604262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2807 1 498 B3 DNA Binding Superfamily AT1G19220 81.526 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo13g2807 AUX_IAA 2.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2807 K14486 - gmx:100804628 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2807 13 59595806 59604262 Amo13g2807 13 59595806 59604262 ECH