Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2806 ATGGCGACAGCTCAGCTAACAGCATGCTCAATTTCCTCGAGGAATGTGTCGTCGTTCGAAGGGCTTCGACCTTCGGCGGTTCAGTTCCCCTCCGTCGTCAGAATTGGAACCCTCACTCAAAGGTCCTTCCGGGGTTTGGTTGTCAAAGCCGCCACTGTTGTTGCTCCAAAGTACACTGCTATTAGGCCTCTCGGCGACAGAGTACTGGTTAAAATTAAGGAAGCAGAAGAGAAGACCGACGGAGGAATTCTACTTCCTTCAACTGCTCAAACAAAACCACAGGGTGGTGAGGTTGTTGCTGTTGGAGAGGAGAAATCAGCTGGGAAGAGCAAAATAGAAACTAGGGTTCAGATTGGTGCGCAAGTTGTGTATTCGAAATATGCTGGTACTGAGGTGGAGTTCAATGGTGCAAAGCATCTTATACTGAAGGACGATGACATTGTTGGTATCCTCGAGACCGATGAGATCAAGGATCTTAAACCGATGAATGATAGAGTCTTAATACAGGTTGCACAAGCAGAGGACAAAACTGCAGGTGGTTTGTTGCTTACCGAAGCAACCAAGGAGAAACCTTCTATCGGAACGGTAATTGCGGTCGGCCCAGGGCCTCTTGATGAGGAAGGTAACAGAAAACCGTTGTCTGTTAATCCTGGGAACACAGTCTTGTACTCCAAATATGCTGGGAACGACTTCAAGGGAAAAGATGGTTCTGACTACATTGCATTGAGGGTCTCAGATATCATGGCTGTCCTTTCCTAG 759 0.4756 MATAQLTACSISSRNVSSFEGLRPSAVQFPSVVRIGTLTQRSFRGLVVKAATVVAPKYTAIRPLGDRVLVKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEEKSAGKSKIETRVQIGAQVVYSKYAGTEVEFNGAKHLILKDDDIVGILETDEIKDLKPMNDRVLIQVAQAEDKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVNPGNTVLYSKYAGNDFKGKDGSDYIALRVSDIMAVLS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2806 252 PIRSF Cpn21 1 252 IPR017416 GO:0006457|GO:0046914|GO:1901671
Amo13g2806 252 Hamap Co-chaperonin GroES [groES]. 60 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 Pfam Chaperonin 10 Kd subunit 61 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 Pfam Chaperonin 10 Kd subunit 159 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 SMART Cpn10_2 158 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 SMART Cpn10_2 60 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 SUPERFAMILY GroES-like 59 152 IPR011032 -
Amo13g2806 252 CDD cpn10 61 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 PRINTS 10kDa chaperonin signature 61 76 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 PRINTS 10kDa chaperonin signature 181 202 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 PRINTS 10kDa chaperonin signature 216 228 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 PRINTS 10kDa chaperonin signature 238 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 SUPERFAMILY GroES-like 158 251 IPR011032 -
Amo13g2806 252 PANTHER GROES CHAPERONIN 1 252 - -
Amo13g2806 252 Hamap Co-chaperonin GroES [groES]. 158 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 Gene3D GroES chaperonin 154 252 IPR037124 GO:0006457
Amo13g2806 252 Gene3D GroES chaperonin 53 153 IPR037124 GO:0006457
Amo13g2806 252 ProSitePatterns Chaperonins cpn10 signature. 61 85 IPR018369 GO:0005524|GO:0006457
Amo13g2806 252 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Amo13g2806 252 CDD cpn10 159 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2806 Amo-Chr13 59516534 59518993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2806 1 252 Calmodulin-binding Proteins AT5G20720 74.409 7.57e-133 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2806 K04078 - gmx:100814751 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2806 13 59516534 59518993 Amo13g2806 13 59516534 59518993 ECH