Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2804 ATGTCTCTCAAGGTAGTACTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACAAGTGAGGAACAACAACAAAGTAATTCCCATGATTCTGGTTCCGAGATTGTTGCTGGAGCAATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAGTGTTCTGTGGAGCTTGTGGATCTGGAGAGTGATGTGGATAAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCACATAAACAATGTGCTGAGGCTTGGTTCAAGATCAAAGGCAACAAAACTTGTGAAATTTGTGGATCAATTGCACACAATGTAGCCGGCACAATCGAAGTTCAAATGACAGAACAGTGGAATGACTCCAATGATGCTTCCATMGCTCCACCAACCGGGCCTGCACCCCCGGCCYGCGAAACTCGAAACTTCTGGCAGGGACATCGTTTTTTGAATTTCCTACTAGCTTGTATGCAACACTAA 537 0.4507 MSLKVVLVAVSAMKVVLLLRQVRNNNKVIPMILVPRLLLEQLRKREGLQFHQISVLWSLWIWRVMWIRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGTIEVQMTEQWNDSNDASIAPPTGPAPPAXETRNFWQGHRFLNFLLACMQH* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2804 178 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 67 176 - -
Amo13g2804 178 SUPERFAMILY RING/U-box 67 122 - -
Amo13g2804 178 ProSiteProfiles Zinc finger RING-CH-type profile. 68 126 IPR011016 GO:0008270
Amo13g2804 178 SMART ringv_2 68 120 IPR011016 GO:0008270
Amo13g2804 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 128 IPR013083 -
Amo13g2804 178 Pfam RING-variant domain 68 119 IPR011016 GO:0008270
Amo13g2804 178 PANTHER ZINC FINGER, RING-CH-TYPE 67 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2804 Amo-Chr13 59363937 59367265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2804 68 176 C3H Transcription Factor Family AT5G05830 64.220 1.06e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2804 - - adu:107457785 228.409