Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2803 ATGACCGAAGAAGAAGACCGAGCATCRGTTGAACCAATCGCCGGCAATGGCGTCTCTCTTCCGCAAGAGCTCGTTGGAGGAGGAGGAGGTACGGCCGAGACGGAGCCAGCGGGACGCGATGCGGAGGTGACTGTAGTTGGTGACGGCAATAWTGGTGGTGGTGCTGCCGCGGGAAAAGTAAAGGGACCGTGGTCTCCGGAAGAGGATGCGGTACTGAGCCGATTGGTGGCGCAGTTCGGAGCGAGGAATTGGAGCATGATCGCGCGGGGAGTTCCAGGCAGGTCAGGGAAGTCATGCCGGCTCCGATGGTGTAACCAGCTGGATCCTTGTGTTAAACGCAAGCCTTTCACTGAGGAAGAAGATTGCATTATCGTATCAGCCCATYCAATCCATGGAAACAAGTGGGCAGCTATTGCAAGGCTTCTTCCAGGTAGAACAGATAATGCYATCAAGAACCACTGGAACTCTACCCTAAAGCGCAGGTGTATGGAACAGGGAAGATATGTTCCTCCGCGTGTTGAAGCGATGGAAGATGGTAGCATTGAGAAAACAAAGGCATCCTCTGAAGAAACCCTGTCAGTTGGGGATATGAATTCATATCCTACACAAGTTAGAAATGTGGTTATGAATACTGAGATTAAACAGCACGAAGATAAACCTCCAACTACAAGAAATGATGTTTCCGAAGTGGAGCAAAATCCTACCCTTCATCGACCAGTAGCACGTATTAGTGCATTRAGTGTTTATAATCCTACAAGCAGGCCSACAAATGGATCATCAAGTTCAAAGATTCTGCCATTGCAAAGCCCTTTYSTCCAACTACCCAAAGRAGTTGAAGGAGCCTGCAAATTATTTGATGGTATTGAATGTGAACCAATGGTTCCATTGWAATGTYGTCATGGATGCTGTGCACCAGAATCAGGGGGAAGCCATTCTCATGGTTCTTCGCTATTAGGTCCCGAGTTTGTTGACTATTTGGATTCTCCCCCTTTCTTAAGTCATGAACTGATTTCCATAGCTACAGACCTAAATAACATMGCATGGATCAAGAGTGGCCTTGAGAACCATGGAGGTGCCAAAGTAACCGATAATGCCGCAAACTTGACAGGASCACAGGGGGCTGCTACTGRTTCSCAAACGGGCTTCTTAGGCCAAGGCCAAAAGAATGACTTCATGCAAATGCAATATGAGGAGGGACCAGGAAAGGTCAMGTTTCTGGGTACAAATACAATGAAAGAAATGTTATCATCGAAGATGCCTCGGCAACATTTCGCAATGCCTGCAGAAGTTTGA 1293 0.4718 MTEEEDRASVEPIAGNGVSLPQELVGGGGGTAETEPAGRDAEVTVVGDGNXGGGAAAGKVKGPWSPEEDAVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDCIIVSAHXIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMEQGRYVPPRVEAMEDGSIEKTKASSEETLSVGDMNSYPTQVRNVVMNTEIKQHEDKPPTTRNDVSEVEQNPTLHRPVARISALSVYNPTSRPTNGSSSSKILPLQSPFXQLPKXVEGACKLFDGIECEPMVPLXCXHGCCAPESGGSHSHGSSLLGPEFVDYLDSPPFLSHELISIATDLNNIAWIKSGLENHGGAKVTDNAANLTGXQGAATXSQTGFLGQGQKNDFMQMQYEEGPGKVXFLGTNTMKEMLSSKMPRQHFAMPAEV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2803 430 CDD SANT 63 105 IPR001005 -
Amo13g2803 430 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 42 356 - -
Amo13g2803 430 MobiDBLite consensus disorder prediction 1 62 - -
Amo13g2803 430 Pfam Myb-like DNA-binding domain 113 157 IPR001005 -
Amo13g2803 430 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Amo13g2803 430 PANTHER MYB PROTEIN-RELATED 42 356 - -
Amo13g2803 430 Gene3D - 114 188 - -
Amo13g2803 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 162 IPR017930 -
Amo13g2803 430 Gene3D - 60 112 - -
Amo13g2803 430 CDD SANT 115 158 IPR001005 -
Amo13g2803 430 SUPERFAMILY Homeodomain-like 58 154 IPR009057 -
Amo13g2803 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 111 IPR017930 -
Amo13g2803 430 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Amo13g2803 430 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Amo13g2803 430 SMART sant 60 109 IPR001005 -
Amo13g2803 430 SMART sant 112 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2803 Amo-Chr13 59336640 59340534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2803 59 392 MYB Transcription Factor Family AT3G55730 47.550 9.31e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g2803 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2803 K09422 - gmx:100781228 507.294