Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2798 ACATGTGCTGCAAATGCAAATGAAAAAGGTGACAAGGCTTCCTTGATTCCTCACTCCAGACGGCCTGCACTCCCCTCTTTGCAAATACCCCCATGGTTGCCCACTCATTACCGGTTACTCCAATCGCATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCAGCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGAAACTTCAACTGGTGATTCTTCAGTCATGGAGATTGCTATTGAGGATGCTACAGCAGATATTCTAGAGGAAGAAGCAATTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAGAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGCGATGTCTGCAAGTAG 534 0.4551 TCAANANEKGDKASLIPHSRRPALPSLQIPPWLPTHYRLLQSHLWVKKVYMADIWDTMVVKQHITRSLSVPVDAKASKLRCTQSRVLIRIISARRHLATVDETSTGDSSVMEIAIEDATADILEEEAICRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCK* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2798 177 ProSiteProfiles Zinc finger RING-CH-type profile. 121 177 IPR011016 GO:0008270
Amo13g2798 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 177 IPR013083 -
Amo13g2798 177 SUPERFAMILY RING/U-box 125 177 - -
Amo13g2798 177 CDD RING_CH-C4HC3_MARCH 129 177 - -
Amo13g2798 177 PANTHER OS02G0165000 PROTEIN 60 177 - -
Amo13g2798 177 Pfam RING-variant domain 129 176 IPR011016 GO:0008270
Amo13g2798 177 SMART ringv_2 128 177 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2798 Amo-Chr13 59270635 59271912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2798 112 177 C3H Transcription Factor Family AT2G37950 47.761 2.89e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2798 - - aip:110265272 243.432