Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2794 ATGCAACTTCCGTTTACAGATGAGGAAGCTGTTTATCGATTCTATAAGACTTATGCAATGATGCACGGTTTCGCTGTGAGGTTGGATGAAGTCAGACGCGATAGCGATGGTTCCGTAATTATGCGCCAAATTGTTTGCAATCGGGCGGGCTTTAGAAAGGAAGAGGTTGAGGGACCACCGACCCTAACTCGAAGTTGTTGCCGGGTGAGAATTCGTGCAAGACTAGATACAAAAATTCAGAAATGGAAGGTTGTTTCGTTCTACGAAGAGCACTCTCATGAATTAGTTGCTCCACTCGACGTTAGCATGATGCCTGAGTATTGCACATTCAGTGTCTCGGATAAAGCTCAGGCAAAGAATTTACACGACATAGGCATCAGGACCTGTCACATCTTGGGATACTTGGCTGCTCAAAAAGCATATGTGAGAAAGAAAGATACCCTTCTTGAATTCATCAATAACATGGAGACCGTGGTTAGCCATTACAGGAACAATGAAAGAGTCGCAGAGTTCAATAGTAAATATACCGATCCAGTACTTGTGACTTCTTTGCCGACACTTGAAGATTTTGCTGCAAAGACTTTCACTCATAATATGTTCCGGGAGGTCAGAAAGGAAATTGAGGGTGCTTGTGCAATGACTTCAAGTTTTGACAGAGTTGGGGGGATGCTTCGTTGCGAGTGTCTATGGTTCGAAAATAGAGGAATTTCCTGCATGCACATATTTGCCTGCCTAAAGCACCAACACGTTGAAGTTATTCCAGAACGCTTAATGTGCAAGCGTTGGACGAAGAATGCCAAGAGTGACTTCATGAAGTCAAACGTCGATGATCCAAGTGATTCTGATAAGGTACTAAAGTGTCGTTTGGGTGTGTTAGGTGCTGAGTGTTCTAGGTTGATGGATGTTGCATGTAAGAACTCAAGTGATTTTGTCGAAGCAATGAATGTTGTTGTCAACACAATTACAAAACTCCAAAAGCGAGGTGAAAATCCATGCAACGGTAACTTAGACGATGACTACGTTGTTGACCCATTGGTGGTGAAGAGTAAGGGAGCCCCCAAGAAAAACTTAAAATTTAAGCAACAGAGAAGGTGCTCAAACTGCGGTGTGACAGGACACTACAACAAAAGTTGTCCTAATCTTCCTGGTAGAATCCCAAAGGAGCCGGTAGACGATGATACAGAAAAGAATATCAACAGCCATCTTGACATCCTCACTAAGCGCAAAAGACATGATAGTGTGAAAAATCAGCAGAAGATGGAAAAAGATAGGAACATTGGTGGTGGAATAGCACCAACCTCAGCAGCTAAATCAGATTATACCGATCAAGTAAAAATATCAAGTCCTAGTCCCAATATCCCGGTTTGTGCATCTACAAGTAACGAAGAGTCCGGGTTGAGTTCCAGACCAGCAGAGTCTCCTGTTGTGGCCCCTGAAACTGGAATGGCAGATTGA 1455 0.433 MQLPFTDEEAVYRFYKTYAMMHGFAVRLDEVRRDSDGSVIMRQIVCNRAGFRKEEVEGPPTLTRSCCRVRIRARLDTKIQKWKVVSFYEEHSHELVAPLDVSMMPEYCTFSVSDKAQAKNLHDIGIRTCHILGYLAAQKAYVRKKDTLLEFINNMETVVSHYRNNERVAEFNSKYTDPVLVTSLPTLEDFAAKTFTHNMFREVRKEIEGACAMTSSFDRVGGMLRCECLWFENRGISCMHIFACLKHQHVEVIPERLMCKRWTKNAKSDFMKSNVDDPSDSDKVLKCRLGVLGAECSRLMDVACKNSSDFVEAMNVVVNTITKLQKRGENPCNGNLDDDYVVDPLVVKSKGAPKKNLKFKQQRRCSNCGVTGHYNKSCPNLPGRIPKEPVDDDTEKNINSHLDILTKRKRHDSVKNQQKMEKDRNIGGGIAPTSAAKSDYTDQVKISSPSPNIPVCASTSNEESGLSSRPAESPVVAPETGMAD* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2794 484 MobiDBLite consensus disorder prediction 436 468 - -
Amo13g2794 484 SUPERFAMILY Retrovirus zinc finger-like domains 355 386 IPR036875 GO:0003676|GO:0008270
Amo13g2794 484 MobiDBLite consensus disorder prediction 410 484 - -
Amo13g2794 484 PANTHER OS01G0607050 PROTEIN 5 107 - -
Amo13g2794 484 PANTHER OS01G0607050 PROTEIN 137 304 - -
Amo13g2794 484 Pfam FAR1 DNA-binding domain 13 96 IPR004330 -
Amo13g2794 484 ProSiteProfiles Zinc finger SWIM-type profile. 213 249 IPR007527 GO:0008270
Amo13g2794 484 ProSiteProfiles Zinc finger CCHC-type profile. 363 380 IPR001878 GO:0003676|GO:0008270
Amo13g2794 484 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 107 IPR031052 GO:0006355
Amo13g2794 484 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 137 304 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2794 Amo-Chr13 59004871 59007261 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g2794 FAR1 4.6e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2794 - - aip:107641230 612.838