Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2784 ATGAGCAAAGCAGGTGATTTACCCAAAATGAAGTTAGAGGCTGGTGAGTTTCCCAAAATGGAAGTGAAGCCATTTAATATCGTTAAAACGGAGATGAATGAATTTTCGAAAAAAGAGCCATCTGGATTTCCCAAAATGGAGTTGGAAGCAGGTGATTTTTCCAAAACAGAGGTGAAGCCATTCAGTATCCTTAAAACAGAGCCAGGAGAGTTTCCTAGAAAGGAGCTGTTAGATTTCTCCTTAGTGGAGAAATTTTTTTCTGACGAAACAGAATCTGAAGGGTCCTTAGTGGAGAATTTTTTTTCTGACGAAGCAGAATCTGAAGGGGCCTCGGCTTCTCAGACTAGTACTTTGACAAGCTTGAAATCATCAATTTTCTCACCTGAATCAGAAAATAGTTTGAGGAGGAAGAGGGATTTGCTGAGCCTCTTGTCTAGTTACTCTGTGAATGCGAGAATGATATTTCAAGATTTCACATCAAAGTCATATGATGAGAGGCAGCTGCCGCTTAATCTACGAGGACTTCTTCCAAAGGAGATAATAAGGGATGCTGAAAATGGTGATAGGTCCTGGTCCCGGTCCAGCTCCGGCTTCGGTGAGGCCGACTTGGACTTCATTCCAGAAGCTATTCTCAATTTGGCTCCTGATCTTGCTGTCCACCAACTCATCCAAACGTTGATTTCCTTTTCTAAAAATCAAAATCTAAACTATATAAAATACATCAGATTGTCAACCAGAAGCGATGTTGAAAAAAGAGCAGTCATGGCAAAAGTAGCAGCAGCCTTGAATGACAAGCATAATGTGCTTGACATTCTGAGTTCATTTCGTGGAACTCTTAGTATTGAAGCCTCAAGTTATCCAACTACAGGAGGAGAGAAGGAACTTCGAAAACATGTTTGTCAGCTACTTCAGCTTTCAATGATTGAAGACGAAGTTTTGTGCACCAGACACATTGAGGAAGAGATGTCAAGCAGCAGGTACCTAGTAATTCTTGCAGACAGGGATGGTGAGGAAATTGTCGATCTACAAAGAGTGGGATTTTGTAAGAGTCTACTGTCAGGAGTTTTGGTACTCATTACCACTGATTCACCAGCACCTCAACATGCTAAAGAAGAAGGATTGATGGAAGCGATAGTGGACTTGGAAATTCGGACTAAAGAACATTTGCTGCCATGGGTGGTCTTCTGTCACAATGTGGGGAAGGATTTTGTATATTCATCAAGTGCCATCCTGACAACTGCAGTGCGCATAGTTGAGGAGTGTCGAAGCCACCTTCACGCAATTCTCCTTGTGGCAAAGTGGTTGAAGAATCATCAAGATGTCAGAAAGTGGGAACTTGCTCTCCTCAAATTGCAATCTGCTAATCCTTCACAAGATATCCACAATTTTCATGGTTTAAACGAGATCATGGTTAACACATTCCTAAACTTAATATGGGATGGCATGAATAAGACACAACAGAATTGCCTACTGAGCTGTATAGTCATCCCTAAAATTAGAGATGGCATGGTTGATCATGAATTGATGAATCACTGGATGTCTTCTCTCTTTGTGGATTCTGGAGAAACAGAAAAGAACCTAAGACAACTTGTAGAAAATTCTGTCTTTCTTCAATTTGATGGTGTTGGAGGCRGGTATACTTGGTTACCAGAAGAAACCTATCAAATGTTAGAACGGCTATACAGCTCATACCCATTGTTCATAGAGAAATCAAACCTAGGGTTGACTGAACCACCCAACCCTGACAAATGGAATAATGCCTTACGAATTGAATTAGCAGGCAATAAAATCTCTGAGTTACCAAAGTCCCCAGCTTGTCTGGAACTCAAAGTTTTGATGCTGCAAAGCAATGCTGATTTGACAAAAATACCATCTTCATTTTTTGGTCAGATGCCACTGCTTTGCATCCTGAACTTATCCTACACTAGTGTAAGAGAACTGCCATCTTCATTGTTTTTTCTGGAGCAGCTTAGAGAACTGTATCTGAAAGGTTGTGAATGCTTCATGAAGTTACCACCTGAAATTGGAAATTTGGAGAAGCTTGAGAAGCTTGATCTTGATGAGACTCAGATCACACATCTGCCAAAAGAGGTCCAGAAGTTAACCAATATGCAAAGTTTGACCCTCTGCTTTTATGAATATCGTGTCAAGAAGRACATGCCATATTCTTGCTCAACAATTATTCCTTCTGGCGTGCTATCTAAACTCAAGAGGTTGGAACATTTGTGTATTGGTGTAAACCCTGATGATGAGCGGTGGGATGAGAATSTGCAAGTTATTCTACCAGAAATATTGGGATTAGAGTGTTTGCAAACTCTCAGTATGTATATCCCACAACCGGAACTTTTGAAGCTCATACCGGCCCACATTTTTGAGCTTGATTTCAGGTTCATTGTTGGTCGTCATATGCAGCGGATTATATCAAGCATACCACCTGCCACTGATGTGAAATTTAAACAAAGTGACTGCAGCTTAAARTTTGTAAAAGGTGAGGGTGTCCCAGATGAAATCAAAACGGTTCTTAGACACAGCAAGGCKCTTTTCTTGGATAGGCATTTCACCTTGAAGAGTCTTTCTGAATTTGAAATGAAAAATTTAGAGCAACTAAGGGTGTGCATATTGGCAGAATGCAAAGAAATGCAGACATGTGGAGGTGGAGCAAAAGATGAAGATGACATGCTTCCGCATTTGCTATTCTTGAGTATATTCCACATGAAGAACCTGAGAAGCATATGGGAAGGCCCAACTTCCCCTCACTCCCCATTTGGTATGTTACAGTCTTTGTCATTGCAAAGTTGTCCCAAGTTGGTGACTCTCTTCTCTTTGGACTTTCTGGGGAATCTTTCTTTGTTGAAGAAACTTATAGTGAAGGACTGCCCCAAATTAAGTACATTGATAAGTCATGAATCATCCAAGCGCAATGCACATACTTTCCTCCCTAAATTGAGCACGTTATTGCTTCTCCATCTTCCTGAATTGTCCAGCATTTCAAACGGGTTGCAAATTGGGCCTGGTTTAAAAGAAATAGCATTTTATGACTGTCCAAAGCTGCACAGTCTTTCAAGGAAGGAATTGGTTAGCAAAGAACTAACGGTAATAAAAGGAGAAACCAACTGGTGGAAGTCACTAGAAGGTCGAACGCCTAATTTTAATCGGATTTTTTCCCCAATTAATGAAGAGGCTGACTTGATGACTCAGTTAGGTATATGTGACGATGACGGTATTGATAATGGTCCAGGTGACTCAGTAGGTAAGCCGTCACAGCCTACAGGGATTGCAACTTGTGTATCAAATTCACCGACTAGGAGAGGCAAATATAGAAGGCGTAGAATCTCAAAAACTTGGGAGGTAGAGACAAGTTATCTCACTGATGATGGACACACGTGGAGAAAATATGGTCAGAAAGCGTTGCTCAACAATAAGTACCCGAGAAATTATTACAGATGCACTCATAAGTATGATCAAGGATGCATGGCCACAAAGCATGTTCAACAGATTGGCGAGGACCCTCCTTTATATAAAACAGCTTACTTTGGGCATCATACATGCCGCCGTAGACCGTAG 3564 0.4097 MSKAGDLPKMKLEAGEFPKMEVKPFNIVKTEMNEFSKKEPSGFPKMELEAGDFSKTEVKPFSILKTEPGEFPRKELLDFSLVEKFFSDETESEGSLVENFFSDEAESEGASASQTSTLTSLKSSIFSPESENSLRRKRDLLSLLSSYSVNARMIFQDFTSKSYDERQLPLNLRGLLPKEIIRDAENGDRSWSRSSSGFGEADLDFIPEAILNLAPDLAVHQLIQTLISFSKNQNLNYIKYIRLSTRSDVEKRAVMAKVAAALNDKHNVLDILSSFRGTLSIEASSYPTTGGEKELRKHVCQLLQLSMIEDEVLCTRHIEEEMSSSRYLVILADRDGEEIVDLQRVGFCKSLLSGVLVLITTDSPAPQHAKEEGLMEAIVDLEIRTKEHLLPWVVFCHNVGKDFVYSSSAILTTAVRIVEECRSHLHAILLVAKWLKNHQDVRKWELALLKLQSANPSQDIHNFHGLNEIMVNTFLNLIWDGMNKTQQNCLLSCIVIPKIRDGMVDHELMNHWMSSLFVDSGETEKNLRQLVENSVFLQFDGVGGXYTWLPEETYQMLERLYSSYPLFIEKSNLGLTEPPNPDKWNNALRIELAGNKISELPKSPACLELKVLMLQSNADLTKIPSSFFGQMPLLCILNLSYTSVRELPSSLFFLEQLRELYLKGCECFMKLPPEIGNLEKLEKLDLDETQITHLPKEVQKLTNMQSLTLCFYEYRVKKXMPYSCSTIIPSGVLSKLKRLEHLCIGVNPDDERWDENXQVILPEILGLECLQTLSMYIPQPELLKLIPAHIFELDFRFIVGRHMQRIISSIPPATDVKFKQSDCSLKFVKGEGVPDEIKTVLRHSKALFLDRHFTLKSLSEFEMKNLEQLRVCILAECKEMQTCGGGAKDEDDMLPHLLFLSIFHMKNLRSIWEGPTSPHSPFGMLQSLSLQSCPKLVTLFSLDFLGNLSLLKKLIVKDCPKLSTLISHESSKRNAHTFLPKLSTLLLLHLPELSSISNGLQIGPGLKEIAFYDCPKLHSLSRKELVSKELTVIKGETNWWKSLEGRTPNFNRIFSPINEEADLMTQLGICDDDGIDNGPGDSVGKPSQPTGIATCVSNSPTRRGKYRRRRISKTWEVETSYLTDDGHTWRKYGQKALLNNKYPRNYYRCTHKYDQGCMATKHVQQIGEDPPLYKTAYFGHHTCRRRP* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2784 1187 SUPERFAMILY WRKY DNA-binding domain 1118 1184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g2784 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 493 IPR027417 -
Amo13g2784 1187 Pfam Leucine rich repeat 608 665 IPR001611 GO:0005515
Amo13g2784 1187 SUPERFAMILY L domain-like 571 1021 - -
Amo13g2784 1187 Pfam WRKY DNA -binding domain 1124 1184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g2784 1187 Gene3D Ribonuclease Inhibitor 807 1034 IPR032675 -
Amo13g2784 1187 PANTHER PROTEIN LAP1-LIKE 438 1053 - -
Amo13g2784 1187 SMART WRKY_cls 1123 1185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g2784 1187 Gene3D Ribonuclease Inhibitor 548 791 IPR032675 -
Amo13g2784 1187 Gene3D WRKY domain 1111 1186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g2784 1187 SMART LRR_typ_2 631 654 IPR003591 -
Amo13g2784 1187 SMART LRR_typ_2 678 700 IPR003591 -
Amo13g2784 1187 PANTHER - 438 1053 - -
Amo13g2784 1187 ProSiteProfiles WRKY domain profile. 1118 1181 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2784 Amo-Chr13 58764584 58769579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2784 1053 1183 WRKY Transcription Factor Family AT3G56400 40.741 5.69e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g2784 WRKY 5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2784 - - aip:107622712 2321.58