Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2781 ATGTCTAGTTCGTCGGAATACTCGGAAATTTCCGGCCAGAAGCCGGCGAGGTCACCGGAAAAATCGAGCTTCTCTCAGACTTGCAGTTTGTTGAGTCAATACATCAAAGAAAAGGGCAACTTTGGAGATCTTACCCTCGGCATCACATGCAACACCGAACCAAGTGGGTCACCTGAAACATCGTGTCAGTCTGCAACAACTATGAACCTATTTCCTACCAAAGAAAACAACGTTGCACCAAAAAGCCTCACACTCACTGGCACAGCCATGGATTTGCTCTCTCCACAAGGTGCTTATCGTGCCAATCTTCCCTCTGAAGAAATTCCAAACTTGATCAATTCCAGTGCAGTTAAGTCTGTGAGCAAGGGCCTGAAAACTGCACAATTGACAATCTTCTATAATGGTCAAGTTGTTGTGTTGGATGATTGTCCTGCTGAGAAGGCGAACGAGCTCATGGCTTTTGCCAAGAAAGGAGTCTCTCAAAGCCAGAACAACTCTGTCTACACCTACACTCAGAGCCAGCCTTCATTTCCTCCTAATTTGGCCAGAACATCTGCTGCTGATTCGAGTGTTCAAGCCTTTCCTAACGTGAATATCGTTGCTAGTTCCGGTAGCAATTCGATCCATGAGCACTCAAAACCTCAGTCCAGACCTGTTGTTTGTGATCTACCAATTGCAAGAAAAGCTTCGCTTCATCGGTTCCTGGAGAAGAGAAAGGATAGAATTGCATCAAAGGGTCCATATCAAGCAGCAAATCCCATTGGGAGCGCTAACAAGCCAGCTGAATCCATGTCATGGCTTGAGTTGGGTGCTAAATCTCAAGAATGA 828 0.4589 MSSSSEYSEISGQKPARSPEKSSFSQTCSLLSQYIKEKGNFGDLTLGITCNTEPSGSPETSCQSATTMNLFPTKENNVAPKSLTLTGTAMDLLSPQGAYRANLPSEEIPNLINSSAVKSVSKGLKTAQLTIFYNGQVVVLDDCPAEKANELMAFAKKGVSQSQNNSVYTYTQSQPSFPPNLARTSAADSSVQAFPNVNIVASSGSNSIHEHSKPQSRPVVCDLPIARKASLHRFLEKRKDRIASKGPYQAANPIGSANKPAESMSWLELGAKSQE* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2781 275 Pfam Jas motif 224 249 IPR018467 -
Amo13g2781 275 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 261 IPR040390 -
Amo13g2781 275 MobiDBLite consensus disorder prediction 244 275 - -
Amo13g2781 275 Pfam tify domain 126 155 IPR010399 -
Amo13g2781 275 PANTHER PROTEIN TIFY 10A-LIKE 16 261 - -
Amo13g2781 275 MobiDBLite consensus disorder prediction 1 23 - -
Amo13g2781 275 SMART tify_2 122 157 IPR010399 -
Amo13g2781 275 ProSiteProfiles Tify domain profile. 122 157 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2781 Amo-Chr13 58482589 58485591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2781 1 272 Tify Gene Family AT1G19180 38.909 5.05e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo13g2781 tify 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2781 K13464 - gmx:100801449 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2781 13 58482589 58485591 Amo03g1481 03 38480513 38483481 hybridization