Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2768 ATGCAGAGGAAAGCAGCATTGCCGTTGAGGGACGCAAAAAGCGGCAATGCGAACAAGATGAAGGCTCTGTGCGGCAAGGAAGCTTTGGTGAAGCTTCTGCGATGGCATTTTGGGTACCCTGATTTCAGGGGAAAGCAATTGGACGCTATTCAAGCTGTTCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCTACTGGAGGAGGCAAGTCGATGTGTTATCAGATTCCTGCACTGGCCAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTAAAAGAGAAAGGTATTGATGCTGAATTTCTCTCCTCAACAATATCAACTGATGCAAAAAATAAGATTCATGACGATCTTGATTCTGGAAAACCCTCTACAAGGCTACTATATGTGACTCCAGAGTTGATAGCAACAGCGGGGTTTATGCCAAAGCTGAAAAAGATTTACGCTAGGGGGCTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGCCATGATTTCAGACCAAGTTACCGTCAACTTTCATTGTTGAGAAGCCACCTACCAGATGTTCCAATATTAGCTCTAACTGCTACTGCTGCTCCTAAGGTTCAGAAGGATGTTGTACAGTCTTTGCATTTGCAAAATCCATTAATTCTTAAATCTTCTTTTAACCGTCCTAATATCTATTATGAAGTTCGATACAAAGATCTTCTGGATGATGCTTATGCTGATTTATCTAATACATTAAAATCTAAGGGAGATGTTTGTGCAATAGTTTACTGTCTTGAACGTTCAATGTGTGATGAATTGTCAGCTCATCTATCCCAAAATGGCATTTCCTGTGCTGCTTATCATGCAGGATTGAATAAGAAAATGCGAACGTCTGTGTTAGATGAGTGGATTTCTTCCAAAATACAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGGATTGATAGAAAGGATGTAAGAATTGTATGCCACTTCAATATTCCCAAGTCAATGGAAGGATTTTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAACTGCCCTGTACAAGTCTGCTGTACTACGGGGTAGATGATCGCAAAAGAATGGAATTCATATTAAGAAATTCAGGAAGCAAGAAATCTCAATCATCTACTTCACAGGAAGAATCATCAAAAAAGTCAATGGCTGACTTTACCCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAAGGATTCTCGAGAGTTTTGGGGAGAAGGTTACTGCATCCCTGTGTGAAAAAACATGTGATGCTTGCAGACATCCAAACTTAGTTGCCCGAAATTTGGAGGATCTGACAACTGCAATTGCTCTGCGCCAGAAAGGCAGTTCTTCTCGAATTTTCATCACCAGTTCTTCTGATGCAATCAACGGAGAACAGTTATCTGAATTCTGGAATCGTGGTGATGAAGCAATTGGCTCAGATGATGATATATCTGACTCCGATGATGGTAATGAGGTTGTCAACAACCTAACCAAGTCAAAGCTTCATTCTAAAGTGGGAGTAAATGAAAAGCTTGCTATGTTAGAACGTGCAGAAGAAAACTTCTATCGAAATGAGAAAGCTAAGAAACAGAGTAAAGTTGACAAGAATGCTATTTCTGATGCAATGCGAGAATCAAGCAGGCAAAGATTACAAAATGCTCTGAAACAGGCTCAGCAGCGACTTGACAACTTAAAGATTGAGTTGGAGACATCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATAGCAAAACTGGCAAATCATTCTATTATTCACAAGTGGCGAGCACGGTTAGGTGGCTGGCAACGACAAGTTCYGTTGATATGTTGAACCGACTTGGCRCAATGAAGGAATCTACATCAATGGATGCTGTTCCTGAAGCTGAAGGTCGCACCCCACCACATGCTATAGATCATTCTGGAAAGGAAGGTACAAGTAATGAACTCTCGGGCAATGCTCAGTCAGAAATTTTGCCTTGCGGTGACAGGGGCATGCCAATAGAAAGTTCTTCCGTTAATACAAAGCTGCCACAGATTCCGTCGTTCTATGAATTTGTTAATAGTAGGAAAACAAAAGGTGACCAATTAGATGACACAAAAAAGAACTCATCTAGAGTAGAAAAGAAAATGAGAGTACAGTAG 2190 0.4087 MQRKAALPLRDAKSGNANKMKALCGKEALVKLLRWHFGYPDFRGKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKEKGIDAEFLSSTISTDAKNKIHDDLDSGKPSTRLLYVTPELIATAGFMPKLKKIYARGLLSLIAIDEAHCISSWGHDFRPSYRQLSLLRSHLPDVPILALTATAAPKVQKDVVQSLHLQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSKGDVCAIVYCLERSMCDELSAHLSQNGISCAAYHAGLNKKMRTSVLDEWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEGFYQESGRAGRDQLPCTSLLYYGVDDRKRMEFILRNSGSKKSQSSTSQEESSKKSMADFTQMVEYCEGSGCRRKRILESFGEKVTASLCEKTCDACRHPNLVARNLEDLTTAIALRQKGSSSRIFITSSSDAINGEQLSEFWNRGDEAIGSDDDISDSDDGNEVVNNLTKSKLHSKVGVNEKLAMLERAEENFYRNEKAKKQSKVDKNAISDAMRESSRQRLQNALKQAQQRLDNLKIELETSASFLEDECYKKYSKTGKSFYYSQVASTVRWLATTSSVDMLNRLGXMKESTSMDAVPEAEGRTPPHAIDHSGKEGTSNELSGNAQSEILPCGDRGMPIESSSVNTKLPQIPSFYEFVNSRKTKGDQLDDTKKNSSRVEKKMRVQ* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2768 729 MobiDBLite consensus disorder prediction 636 729 - -
Amo13g2768 729 CDD SF2_C_RecQ 232 365 - -
Amo13g2768 729 Pfam RecQ zinc-binding 369 440 IPR032284 -
Amo13g2768 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 377 IPR027417 -
Amo13g2768 729 MobiDBLite consensus disorder prediction 706 729 - -
Amo13g2768 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 396 IPR001650 -
Amo13g2768 729 SMART ultradead3 38 240 IPR014001 -
Amo13g2768 729 Gene3D - 8 231 IPR027417 -
Amo13g2768 729 MobiDBLite consensus disorder prediction 378 397 - -
Amo13g2768 729 MobiDBLite consensus disorder prediction 683 701 - -
Amo13g2768 729 CDD DEXHc_RecQ 31 231 - -
Amo13g2768 729 Pfam Helicase conserved C-terminal domain 252 354 IPR001650 -
Amo13g2768 729 MobiDBLite consensus disorder prediction 379 397 - -
Amo13g2768 729 Coils Coil 562 582 - -
Amo13g2768 729 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 32 453 IPR004589 GO:0004386|GO:0006310
Amo13g2768 729 Gene3D - 232 458 IPR027417 -
Amo13g2768 729 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 713 - -
Amo13g2768 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 224 IPR014001 -
Amo13g2768 729 Pfam DEAD/DEAH box helicase 46 212 IPR011545 GO:0003676|GO:0005524
Amo13g2768 729 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 6 713 - -
Amo13g2768 729 SMART helicmild6 275 356 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2768 Amo-Chr13 57831781 57839205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2768 35 379 Eukaryotic Initiation Factors Gene Family AT3G19760 22.888 6.37e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2768 - K10901 gmx:100819601 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2768 13 57831781 57839205 Amo13g2768 13 57831781 57839205 ECH
Amo13g2768 13 57831781 57839205 Amo03g1434 03 36537194 36543673 hybridization