Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2759 ATGGCAACTCAGCAACAAGAACAAGACTTTCCAATGCACAGAGACCAAGTTGATGGTATCACTACCACTGCTACCGTAGCTCACACTGCAATTCATAAGGGTGTAGAATCAAGTGAAATAACTGAACTACCTAGTAGACAACATGGAAGAAGGCAAAATCTTATGTTGGAGATACCTGCAAGAAATCTTGATGAAGCAAGAGAGGAATTCTTGAGAATTAACATGCCTTCTACAAGCCCTGCTTTCTCCAGTATCAATGAGTTACAACCAAAAAATAAATCAAATATTAAAGCCCTTATTCCCAAACTTAGCTTTAAGTTAGGGAACACCGAAAAGGCTTCCATTCTAGCACTTGAAGGTTCTTCCACAGAGGTGCCGAAAAAGCCTATGATTTCGAGGACATTATCTCTTACAAAGTTGATCACACCTAGAGGGAAGAAGATGTCATCTTTACCCGTGACACCAATTGGAGGAAACACAACCAATATGACAACATATGTGAGAAAAGGACAGCAATCATCGATCCATCGTTCGCGTTCAGTTCCTGCACTTAACAAAGATGGGAACACATCAGTAGGTGTGATGCTGCGCATAGTTCCTACTACGCCACGGTTAGCTGGTAGCGCTGCCACAACATCTATGAAATCTTCACCTGACATTACTGTTGAGAATGAGGATGGAGAGGACATTCCTGAAGAAGAAGCTGTGTGTAGAATATGTTTGATTGAACTTGGAGAAGGTTCTGATACCCTTAAAATGGAGTTCAGCTGCAAAGGTGAACTAGCATTGGCGCACCAAGAATGCGTGGTTAAATGGTTCAGCATCAAAGGTAACAGAACATGTGATGTGTGCAAGGAACAAGTTCAGAACCTACCTGTCACTCTTTTACGAATTGCGAGTACTCATTCACCAAACTTCTTGATAAGTAGCCAAGGTCAGCAATACAGGGTTTGGGAAACTGTTCCAATTCTTGTGGTTATCAACATGATGGCTTACTTCTGTTTTGTTGAGCAGCTTCTTGTTTCAAATATGGGGTCTGGTGCCATTGCAATATCTCTCCCATTTTCTTGTATATTAGGCCTTCTTTCAAGCATGACATCAACAACAATGGCGAGGAGAAAACATGTCTGGCTTTATGCGATTGCCCAATTTGTTATGGTGTTTCTTGCTGGTCGTCTTTTCTATTCACTGCTTCATGTGCAAGCAGTGCTATCTATGCTACTTGCTACATTTACTGGGTTTGGAGCTGTAATGTGTGTAGCCTCTGTTCTGTTTGAGTTTCTGAAATGGAGGAGAAGATGGTTTGCTCAGTTGAATCAGCATCAGCTTGGTTCCCAAGAGGTGGCTGTACCAACTCATCAATCATCTGCAACAACCACTTAA 1383 0.4187 MATQQQEQDFPMHRDQVDGITTTATVAHTAIHKGVESSEITELPSRQHGRRQNLMLEIPARNLDEAREEFLRINMPSTSPAFSSINELQPKNKSNIKALIPKLSFKLGNTEKASILALEGSSTEVPKKPMISRTLSLTKLITPRGKKMSSLPVTPIGGNTTNMTTYVRKGQQSSIHRSRSVPALNKDGNTSVGVMLRIVPTTPRLAGSAATTSMKSSPDITVENEDGEDIPEEEAVCRICLIELGEGSDTLKMEFSCKGELALAHQECVVKWFSIKGNRTCDVCKEQVQNLPVTLLRIASTHSPNFLISSQGQQYRVWETVPILVVINMMAYFCFVEQLLVSNMGSGAIAISLPFSCILGLLSSMTSTTMARRKHVWLYAIAQFVMVFLAGRLFYSLLHVQAVLSMLLATFTGFGAVMCVASVLFEFLKWRRRWFAQLNQHQLGSQEVAVPTHQSSATTT* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2759 460 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 458 - -
Amo13g2759 460 SUPERFAMILY RING/U-box 233 288 - -
Amo13g2759 460 Pfam RING-variant domain 237 284 IPR011016 GO:0008270
Amo13g2759 460 SMART ringv_2 236 285 IPR011016 GO:0008270
Amo13g2759 460 MobiDBLite consensus disorder prediction 207 228 - -
Amo13g2759 460 ProSiteProfiles Zinc finger RING-CH-type profile. 229 291 IPR011016 GO:0008270
Amo13g2759 460 CDD RING_CH-C4HC3_MARCH 237 285 - -
Amo13g2759 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 292 IPR013083 -
Amo13g2759 460 PANTHER OS02G0165000 PROTEIN 2 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2759 Amo-Chr13 57531084 57534642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2759 222 301 C3H Transcription Factor Family AT2G37950 33.333 8.21e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2759 - - gmx:100789854 540.421