Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2738 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAAATGATCCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTGCAATTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGATGTCATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTTTGAAAATGATTGTGCTGGAATTAACTTCAAAAGATCTTACTGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATTATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTTGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATATATGCCACTCAAATGTTATTTAATCCTAATCTTCCTGAAGTTGTTGAATTCACGCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCAACCACTGTTTATCGCAAATGAGGGAGGGTTTTTTTTTTTTATCATTTTTAGTACAATCAAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACACTTGAAGATCATAGTGGGGAGGGTATTTTTGTTTTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGCTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACTAAAGGTGTCGCACATGATACATTTTATGGCACTTTTCAAGTTAGGAGAATATGTGATGATCCCACTATTATTGCCATGTTTGAACTTCCCGATTATGATGCTGATAATGAGTCTACTCCAAAAAAGCCTGCTGTTTTCGGAGGGACTGAGTTTGCTGCCTTAATTAATGATGAAGATGGAAAAGATGAGAAAACACCCAACAATGATACTGAGGTGTTGTCCCACGTTCTCGATCCCCCTTCCCAATATGGAGAGAAACTTATTCATGAAAATCATGTTGTCACCTCCAAGGGGAAGAAGAATTTGAATCCCCAATTTGAAGAGGCGGCTACTGATGCAGATGGGCGTGGGTCCAAGATTGCCAAGGTTAATGGAGTTTGA 1347 0.3883 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCGKIQAAIKKPLLNRFRDHIVEGQVYRMAYFTVVSNHDVIGLLTSVGEEKEYAKEGKILKMIVLELTSKDLTVRCALFGDYVNQVNYFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVIYATQMLFNPNLPEVVEFTQSMIEQGVNGTQPLFIANEGGFFFFIIFSTIKGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITLEDHSGEGIFVFFDREASYLLKKSCADLFTELICGDTYPPIFQGLIGKKLLLKVDTKGVAHDTFYGTFQVRRICDDPTIIAMFELPDYDADNESTPKKPAVFGGTEFAALINDEDGKDEKTPNNDTEVLSHVLDPPSQYGEKLIHENHVVTSKGKKNLNPQFEEAATDADGRGSKIAKVNGV* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2738 448 CDD RPA1_DBD_C 217 339 IPR013955 -
Amo13g2738 448 Gene3D - 192 342 IPR012340 -
Amo13g2738 448 CDD RPA1_DBD_B_like 88 191 - -
Amo13g2738 448 SUPERFAMILY Nucleic acid-binding proteins 209 337 IPR012340 -
Amo13g2738 448 Pfam Replication factor-A C terminal domain 211 295 IPR013955 -
Amo13g2738 448 PANTHER REPLICATION FACTOR A 1, RFA1 22 295 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo13g2738 448 CDD RPA1_DBD_A_like 19 86 - -
Amo13g2738 448 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 295 - -
Amo13g2738 448 Gene3D - 87 173 IPR012340 -
Amo13g2738 448 Gene3D - 4 86 IPR012340 -
Amo13g2738 448 SUPERFAMILY Nucleic acid-binding proteins 3 83 IPR012340 -
Amo13g2738 448 SUPERFAMILY Nucleic acid-binding proteins 86 190 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2738 Amo-Chr13 56310006 56312905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2738 11 294 Core DNA Replication Machinery Family AT5G08020 22.043 3.71e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2738 - - adu:107471135 625.935