Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2685 ATGAAACCGTTTCTCTCGCTCAATTATCCGGATACGGCATTCGATTGTGCACAAATTGAATGCGATTACTCGATGGCTCATGGTTCCTATCCTTACGAAGATCCCTTTTTCGCCGGTTCATTAATTGCTTATGGACCACAGGGTATTAATCAACCCCAAATGTTGCCCCAGATGCTAGGATTGCAATCCACTAGAGTTGCTTTACCACTTGATCTTGCCGAGGATGGCCCCGTTTATGTCAATGCAAAACAATACCACGGTATACTGAGAAGGCGTCAGTCGCGAGCAAAGCTTGAGGCTCAGAACAAACTTATAAAAAATCGTAAGCCATATCTACACGAGTCTCGCCATCGCCATGCTTTGAATAGGGTGAGGGGTTCCGGGGGACGATTCCTGAGCACCAAACAGTTTGAACAATCTAATGCTGAAGTTGCCACCGGCGCGCATTCTAGCTCAGACACCAGCAAGGATGCATCCAAGGTTGAAAGTCATCTCTTGAGAACAGCTGGCAATGCATCTTCAATCACAACCTGCTCGGATCGGACGTCCTTGTCAAGCAACAGTGTTAGCAGGCAGCCGGAAGCGCAGCTGTTCCTGGCAGGCCCTGCAAACTTGGGCCGAGCTCCAGTGGTCCGGTGA 639 0.493 MKPFLSLNYPDTAFDCAQIECDYSMAHGSYPYEDPFFAGSLIAYGPQGINQPQMLPQMLGLQSTRVALPLDLAEDGPVYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGSGGRFLSTKQFEQSNAEVATGAHSSSDTSKDASKVESHLLRTAGNASSITTCSDRTSLSSNSVSRQPEAQLFLAGPANLGRAPVVR* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2685 212 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Amo13g2685 212 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Amo13g2685 212 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Amo13g2685 212 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Amo13g2685 212 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 194 IPR001289 GO:0003700|GO:0006355
Amo13g2685 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 194 - -
Amo13g2685 212 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Amo13g2685 212 MobiDBLite consensus disorder prediction 140 160 - -
Amo13g2685 212 Gene3D - 74 136 - -
Amo13g2685 212 MobiDBLite consensus disorder prediction 140 154 - -
Amo13g2685 212 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2685 Amo-Chr13 54340859 54344054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2685 17 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.317 2.61e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo13g2685 CBFB_NFYA 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2685 K08064 - gmx:100793856 284.263