Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2682 ATGGATACTGCTTACTTCTTCTTTGCACTGAAACATAAGGAGAACCTCTGTCTGTATGGATACCCCACTGAACAGTGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGCTAACTTTAGTTGCAGTTCACAGTGATGCATGGCTAATTGCAGTGGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGAGCTGACAGGTATATATATATATATATATCCTACAATCTTTTTGGCCTATACATGAAACGTCTATTCACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAGTCGAAGGAAAAGTCATCAGTTTCAAACCACACAAACAGCAAATCAAAATCTAGTTCAAAAGGGCGAGGATCTGAATCGGTTAAGCAAACAAAGCAAGCAAAGGAAGAGGATGAGGGTGCAGAGGAATATGAGGAGGAGCATGGGGAGACCCTGTGTGGTGCATGTGGGGAGCTCTATGCAGCTGATGAGTTTTGGATTTGCTGCGACATATTTAGTTTATGGGTTCCAAACCATTCTGGTCTGTATTTGCAGTCTCTAGTGGCTACATTGGCTTTCAGAACAAATTATCCAAGTTTCGCTACTTATGCTCCAAGGGTTGAGCCTGATGTGGTAGATGTAGCAAACGCACTAGCAAGACAACATCCATATGAAGAATCTTCTTTGATACTCGCTTTGGATCTAGAGGCTATGAATGCACCAGATTTTTCTGAGTATATCAATGCAGACCCTCCTGTTGTAGTGAATGATGAGTTCGTCGTTGGCATAGAGTTCAATTCTAAAGAAACTATGATTGCGGCAATCAAAGATGATACCATTTGCACGGGTATGGATTACAGGGTGTGTGAATCTGAGCCAACCATATTCTATGCCAAACAGTACAACGGTAGTCACATATGCACCAACACTATCATTTCTCAAGATCTTGCTATAATAAACTCAGACACGATTGCCGAAGCGATAACGCCATTGGTTGAATCCAACCAATCTCTAAATGTGAAGTATGTGATTGTTGAAATGCAATCCAAGTTCCATTATATGATCAATTACTGCAAGATATGA 1161 0.4126 MDTAYFFFALKHKENLCLYGYPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLIAVAFYFGARFGFDRADRYIYIYISYNLFGLYMKRLFTMINDLPTIFEVVTGTAKKQSKEKSSVSNHTNSKSKSSSKGRGSESVKQTKQAKEEDEGAEEYEEEHGETLCGACGELYAADEFWICCDIFSLWVPNHSGLYLQSLVATLAFRTNYPSFATYAPRVEPDVVDVANALARQHPYEESSLILALDLEAMNAPDFSEYINADPPVVVNDEFVVGIEFNSKETMIAAIKDDTICTGMDYRVCESEPTIFYAKQYNGSHICTNTIISQDLAIINSDTIAEAITPLVESNQSLNVKYVIVEMQSKFHYMINYCKI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2682 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 202 IPR013083 -
Amo13g2682 386 MobiDBLite consensus disorder prediction 128 172 - -
Amo13g2682 386 MobiDBLite consensus disorder prediction 128 153 - -
Amo13g2682 386 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 11 202 - -
Amo13g2682 386 PANTHER CPG BINDING PROTEIN 11 202 IPR045104 GO:0006355|GO:0042393
Amo13g2682 386 Pfam Alfin 12 122 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2682 Amo-Chr13 54228780 54233012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2682 13 201 Alfin-like Transcription Factor Family AT3G42790 62.827 9.90e-62 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2682 - - rcu:8272513 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2682 13 54228780 54233012 Amo13g2682 13 54228780 54233012 ECH