Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2663 ATGGATCTCCTTGGACCTAGTCTAGAAGATCTATTCAACTTCTGTAGTAGAAAGCTCTCGCTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTATTCATTCTAAATCATTTCTACATCGGGATCTCAAACCAGATAATTTCCTCATGGGATTGGGAAGGCGGGCTAACCAGGTTTACTGTATTGATTTTGGATTGGCAAAGAAATATAGAGATAGTACAACTCACCAACACATTCCTTACAGGGAAAACAAGAATTTGACCGGAACGGCAAGATATGCGAGCATGAATACTCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAATCACTTGGTTTTGTCTTGATGTACTTCCTGAGAGGAAGTCTCCCTTGGCAAGGACTTAGAGCGGGAACCAAGAAACAGAAGTATGAGAAAATCAGTGAAAAAAAAGTCACTACCTCAATAGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCTTTAAGGTTTGATGATAGGCCAGATTATGCTTACCTGAAGAGAATATTCCGTGACCTGTTTATTCGTGAAGGATTTCAGTTTGATTATGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAACTAGCCACTCCACCAGCGCGTGCTTCTGCTCCTAATGCTGGAACTAGTTCTGGGATGCCTCCGCCTATGACCAGCGCTGCTGATAGGCAGACAGGAGGGGAAGAAGGAAGACCACCTGGCCTGGTTTCTGTGGATTCAAGGCGAATAATATCAGGGCCCATTTTAAATTCAGTAACTTCTTTAAAGCAGAAAAATGCGGTCATCCCTGATTCTGCTGTTAGTAAGGATGCTATGTTATCTAGCACCAATATCTTGGGCCAGTCAAGTGGATCAAGGCGAGTTGCTGCTGGCAGCCGTGAGACTTTTGCTGGTGTCGAATTGGATCCTCGTACGCGTATGGCAGAGGCTAGCCCTGGAGCAGCAAACAGAGTTTCAAGTGTGCGAAAAAGTTCACCTATTAGGTCTTTAGACCCCAAGAAAGTAGTATCATCAGCTAAAGGTGCTTCCCATGTCAAGAATTATGAAAGTACAGTTAAGGGTATGGAGCGTTTGCAGTTAGAAGATGATGAGAGGGCCCCTTAA 1176 0.4371 MDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDLKPDNFLMGLGRRANQVYCIDFGLAKKYRDSTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLRAGTKKQKYEKISEKKVTTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARASAPNAGTSSGMPPPMTSAADRQTGGEEGRPPGLVSVDSRRIISGPILNSVTSLKQKNAVIPDSAVSKDAMLSSTNILGQSSGSRRVAAGSRETFAGVELDPRTRMAEASPGAANRVSSVRKSSPIRSLDPKKVVSSAKGASHVKNYESTVKGMERLQLEDDERAP* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2663 391 SUPERFAMILY Protein kinase-like (PK-like) 1 209 IPR011009 -
Amo13g2663 391 PANTHER CASEIN KINASE I-LIKE 1 373 - -
Amo13g2663 391 MobiDBLite consensus disorder prediction 223 242 - -
Amo13g2663 391 Pfam Protein kinase domain 10 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2663 391 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2663 391 SMART serkin_6 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2663 391 PANTHER CASEIN KINASE-RELATED 1 373 - -
Amo13g2663 391 MobiDBLite consensus disorder prediction 331 391 - -
Amo13g2663 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Amo13g2663 391 MobiDBLite consensus disorder prediction 223 261 - -
Amo13g2663 391 Gene3D Transferase(Phosphotransferase) domain 1 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2663 Amo-Chr13 53226990 53233477 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2663 19 201 MAP Kinase Kinase Kinase AT1G62400 29.189 2.37e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Amo13g2663 Pkinase 2.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2663 K02218 - zju:107424125 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2663 13 53226990 53233477 Amo13g2663 13 53226990 53233477 ECH
Amo01g2742 01 98166854 98171174 Amo13g2663 13 53226990 53233477 PCT
Amo13g2663 13 53226990 53233477 Amo01g2742 01 98166854 98171174 PCT