Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2596 ATGGTCCCTTTGGATAAATTGGCCTGGGCACGTGGTGACCGCTCTTATTTTCAGGCACAAATGTCAGAGGAGGAAGATTGCTCTTCTTCTTGTTTGAAAGATTGCAATTGTTGGGCTGCTTCTTATGATCAGAATAGCATGATTTGTACAAAGCAGCAACCCCCTCTCAGATATGCAAAAAGGATACAGGGAAACGAAGAAGTACCCTCCTTGAAATTCTTCAAGGTAAGAAACTTGAACTTGAATAATGTTAGCAGTGAGCCTGTCCCTGAGATTCTTGGAACAATCAATTCATCAAGACTACTAATTCGAGTTCTCAAGTACAAAAGGCTCTTGGAGATTGGGGACTTGGGGCTGAATGAGGAAGTGGCTTTGAGGAGATTTTCATACACTGAGCTCAAGAGAGCAACCAACGGTTTCAAACAAGAGTTGGGAAAGGGCTCTTTTGGAGCAGTTTACAAAGGGGTTTTATACAAGGCGGGAAGATGTAGGAGATTCATTGCGGTGAAGAGACTTGAGAAGTTGGTTGAAGATGGAGAAAGAGAGTTCCAAGCAGAGGTGAGAGCCATTGGAAAAACACACCACAGGAACCTTGTTCGCTTGCTTGGCTTCTGTGCCGAGGGTCCCAAAAGGCTTCTGGTCTATGAATACATGAGTAATGGTTCCCTTGGGAAGCTTCTCTTTGGCGATGAAAGGCTTCCAGATTGGGATGAAAGAGTCAGAATAGCTCTGGATATTGCAAGAGGGATCCTCTATCTGCATGAAGAATGTGAGGCACCCATCATTCACTGCGACATAAAGCCTCAAAATATCTTGATGGATGAGTTCTGGACTGCCAAAATATCCGATTTCGGGCTAGCAAAGCTTCTCATGCCGGATCAAACAAGAACTTTCACAGGGGTTAGAGGGACAAGAGGATACTTGGCCCCTGAATGGAACAAGAACACACCAATAACAGTGAAGGCTGATATCTACAGCTATGGGATAGTGCTTCTTGAGACAGTGTGTTGCAGGAGAAACCTTGATGTTAATGTGTCAGAGCCAAATGAGATTCTTCTGTCTGGTTGGGCCTATAAGTGCTTTGTTGCTGGAGAGGTGCACAAGCTAGTTCATTGGGAAGAAGTGGATAAGAATGTTGTGGAAAATATGGTGAAGGTGGCACTGTGGTGTATCCAAGATGAACCTGTTCTCCGGCCTTCAATGAAGAGTGTGGTGCTCATGCTTGAAGGGGTTACTGATGTGCCAGTTCCTCCTTGCCCAACTTCTAATTCCATGTGA 1278 0.4484 MVPLDKLAWARGDRSYFQAQMSEEEDCSSSCLKDCNCWAASYDQNSMICTKQQPPLRYAKRIQGNEEVPSLKFFKVRNLNLNNVSSEPVPEILGTINSSRLLIRVLKYKRLLEIGDLGLNEEVALRRFSYTELKRATNGFKQELGKGSFGAVYKGVLYKAGRCRRFIAVKRLEKLVEDGEREFQAEVRAIGKTHHRNLVRLLGFCAEGPKRLLVYEYMSNGSLGKLLFGDERLPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWNKNTPITVKADIYSYGIVLLETVCCRRNLDVNVSEPNEILLSGWAYKCFVAGEVHKLVHWEEVDKNVVENMVKVALWCIQDEPVLRPSMKSVVLMLEGVTDVPVPPCPTSNSM* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2596 425 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 423 IPR045874 GO:0004672
Amo13g2596 425 SMART serkin_6 138 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2596 425 ProSitePatterns Protein kinases ATP-binding region signature. 144 170 IPR017441 GO:0005524
Amo13g2596 425 Gene3D Transferase(Phosphotransferase) domain 1 218 417 - -
Amo13g2596 425 Gene3D Phosphorylase Kinase; domain 1 112 217 - -
Amo13g2596 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Amo13g2596 425 SUPERFAMILY Protein kinase-like (PK-like) 124 409 IPR011009 -
Amo13g2596 425 Pfam Protein kinase domain 141 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2596 425 ProSiteProfiles Protein kinase domain profile. 138 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2596 425 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 5 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2596 Amo-Chr13 49644900 49646272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2596 119 414 Receptor kinase-like Gene Family AT1G56120 45.515 1.42e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo13g2596 Pkinase 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2596 - - aip:107633068 777.319