Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2594 ATGCTTGATTCTGGAAACTTAATTCTCTACCACCAGAATTCCACCATCATATGGCAGAGTTTTGACCACCCAACTGACACAATCCTAGGGGGCCAGTCTCTACCATATGAAGCTCAACTGCTGTCTGGTTATAGCTCGTCATCAAGAAAACGATTTATTCTCGCCATGCAGTCTGATGGGAATCTTGTTCTGTATCCTGGAGACACGGCGAACACACCCATCGATGCGTATTGGGCATCTGGAACTTTCAACCCTCCCGGTCTCAAGTATCATCTTTACCTTGATGCCAACGATAGCTCTCTGCTCATCAAGGACAACACTTCAAGCATCCAAAGGGTTCTCTATTCTGGTTCATCTTTGCCGGGAAGAGGAAGCAAAATATATCGTGCTACACTGGATACTGATGGATTCTTCCGGTTGAATGCGCATGATATCAACAATGCCAACCTCTACACTCTCTCGGGATGGCCACAAGGCAACAATTCTTGTTTGGTAAAGGGTATCTGTGGCCACAACAGCATCTGCAAATTCGATGCCAGGAAGCCACACTGCACTTGTCTTCCTGGATACGACTATATTGATCCCAACCAACACAGTCTTGGTTGTAGAAGAAACATTTCCCAACCAAACTGCGCTGGAAAAGATTACATGGTCCCTATGCAAAATTTGGTGTGGGCCAATCGTCCTTATTACGCCGCGGCCAAGAAGTTGCAGAAAGAGGAATGCGCATCCTCTTGTTTGGTGGATTGCAAGTGCTGGGCTGCTCTTTATACCAACGGGCTCTGCATCAGGCAAGAGCCCCCTCTCAGGTATGCTAGATTCACGGTGCAAGACGAACAACCCTCCTCCGCGTTCTTGAAGGTCGGAAACATGAAGCTCAATGCTCCTATGCCTGTGCCTGATCAACCACCTCAAAAGAGTAGTACTAGTGACAAAGCAATTCTGCGTATTGTTCTTGTTACCTCCATTTTCACTCTGATTTTCTGCTCAACTATTGGGATATCTTGCCATTTGATGTCGAAGATTCGAGTTCTCAAGTACAAGAGGCTCTTGGAGATTAGGGACTTGGGGCTGAATGAGGAAGTGGCTTTGAGGAGATTTTCATACAGTGAGCTCAAGAGAGCAACCAACGGTTTCAAACAAGAATTGGGAAAGGGCTCTTTTGGAGCAGTGTACAAAGGGGTTTTATACAAGGAGGGAAGAAGTAGGAGACTCATTGCGGTGAAGAGACTTGAGAAGTTGGTTGAAGATGGAGAAAGAGAGTTCCAAGCAGAGGTGAGAGCCATTGGAAAAACACACCACAGGAACCTTGTTCGCTTGCTTGGCTTCTGTGCCGAGGGTCCCAAAAGGCTTCTGGTCTATGAATACATGAGTAATGGTTCCCTTGGGAAGCTTCTCTTTGGCGATGAAAGGCTTCCAGATTGGGATGAAAGAGTCAGAATAGCTCTGGATATTGCAAGAGGGATCCTCTATCTGCATGAAGAATGTGAGGCACCCATCATTCACTGCGACATAAAGCCTCAAAATATCTTGATGGATGAGTTCTGGACTGCCAAAATATCTGATTTCGGGCTAGCAAAGCTTCTCATGCCGGATCAAACAAGAACCTTCACAGGAGTTAGAGGGACAAGAGGGTACTTGGCCCCTGAATGGAACAAGAACACACCAATAACAGTGAAGGCTGATATCTACAGCTATGGGATAGTGCTTCTTGAGACAGTGTGTTGCAGGAGAAACCTTGATGTTAATGTGTCAGAGCCAAATGAGATTCTTCTGTCTGGTTGGGCCTATAAGTGCTTTGTTGCTGGAGAGGTGCACAAGCTAGTTCATCGGGAAGAAGTGGATAAGAATGTTGTGGAAAATATGGTGAAGGTGGCACTGTGGTGTATCCAAGATGAACCTGTTCTCCGGCCTTCAATGAAGAGTGTGGTGCTCATGCTTGAAGGGGTTACTGATGTGCCAGTTCCTCCTTGCCCAACTTCTAATTCCATGTGA 1995 0.4632 MLDSGNLILYHQNSTIIWQSFDHPTDTILGGQSLPYEAQLLSGYSSSSRKRFILAMQSDGNLVLYPGDTANTPIDAYWASGTFNPPGLKYHLYLDANDSSLLIKDNTSSIQRVLYSGSSLPGRGSKIYRATLDTDGFFRLNAHDINNANLYTLSGWPQGNNSCLVKGICGHNSICKFDARKPHCTCLPGYDYIDPNQHSLGCRRNISQPNCAGKDYMVPMQNLVWANRPYYAAAKKLQKEECASSCLVDCKCWAALYTNGLCIRQEPPLRYARFTVQDEQPSSAFLKVGNMKLNAPMPVPDQPPQKSSTSDKAILRIVLVTSIFTLIFCSTIGISCHLMSKIRVLKYKRLLEIRDLGLNEEVALRRFSYSELKRATNGFKQELGKGSFGAVYKGVLYKEGRSRRLIAVKRLEKLVEDGEREFQAEVRAIGKTHHRNLVRLLGFCAEGPKRLLVYEYMSNGSLGKLLFGDERLPDWDERVRIALDIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWNKNTPITVKADIYSYGIVLLETVCCRRNLDVNVSEPNEILLSGWAYKCFVAGEVHKLVHREEVDKNVVENMVKVALWCIQDEPVLRPSMKSVVLMLEGVTDVPVPPCPTSNSM* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2594 664 Pfam D-mannose binding lectin 1 38 IPR001480 -
Amo13g2594 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 662 IPR045874 GO:0004672
Amo13g2594 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Amo13g2594 664 Pfam Protein kinase domain 380 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2594 664 SMART serkin_6 377 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2594 664 ProSiteProfiles Protein kinase domain profile. 377 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2594 664 ProSiteProfiles Bulb-type lectin domain profile. 1 116 IPR001480 -
Amo13g2594 664 SUPERFAMILY alpha-D-mannose-specific plant lectins 44 140 IPR036426 -
Amo13g2594 664 Gene3D - 24 162 - -
Amo13g2594 664 Gene3D Transferase(Phosphotransferase) domain 1 457 656 - -
Amo13g2594 664 ProSitePatterns Protein kinases ATP-binding region signature. 383 409 IPR017441 GO:0005524
Amo13g2594 664 SUPERFAMILY Protein kinase-like (PK-like) 363 648 IPR011009 -
Amo13g2594 664 Gene3D Phosphorylase Kinase; domain 1 355 456 - -
Amo13g2594 664 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 1 662 - -
Amo13g2594 664 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 84 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2594 Amo-Chr13 49549714 49552810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2594 299 653 Receptor kinase-like Gene Family AT1G56120 41.667 9.82e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo13g2594 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2594 - - aip:107633068 849.351