Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2592 ATGTCAGTTTTGTCTTCTGTTGTAGCAGCATTGGCTGCCATCCTGAGACTTGATCACTCACACTCACTCTCACTGGTTGAAACTTTATTGCTCACGCACGCTGGCAGAGTGTTGCTGACGGTGCTGGTGGTGGTGGGAAAGGGAGTGGAGGAGGGTGAGTGTGGGACTGTGGGAATAGTTAAGACTACACAAAATCCTATGGCATCAACACCTGCTCTGTTATTGCTAGTGTTGTTGATGCTATTTGCAAATGAAACCACAGCTGAGACAAACCACACTCACCTCATTTCTATAGGGTCTGTGATATCTCCTACAGGCACGCACGCTTCATGGGCATCACGTTCTGGCCTCTTTGCTTTTGGCTTTTACCCCCATGGTAATAGCTATGCTGTTGGAATATGGCTGCTTAATCAACCTAACCACACAATTATGTGGACTCATAATCGTGATAGTCCATCAGTGCCTTCAAATTCCACATTGAGATTGACCAAAGAAGGCGGGCTACTTCTTCTGCAAGGAAATGAAGACCCAGAGTTTCTCACTCCACTTTATTATTTATATCAGGCTAAAGTAGAAGTGGCTTCAGCATCTATGCTTGATTCTGGCAACTTTGTGCTTTATGATAAGAATTTTAGTATGTTATGGAGTAGTTTCCATAACTCAATGCCAAGTGACACCATATTAGGTGGCCAGAATTTGACAAGTGGAGCGAAGCTGGTCTCTAGTGTGTCACAATCAGACCATTCGAGTGGACATTTTTGGCTAAGAAGGCAGTTTGATTATGTACACCTAGCTGCTTGCCGTGTGAACAGCACATGTGAACCGGAGGATGCTTATTGGGCTAAAAACACATACTTTGAAGGTTATGGTTATCTACAGCTCAGTCTTAGCATTGAAGGTTCGCTTTGCCTACAAGATTATTCCTCTGGTTCTGAACTAGAGTGTTTAGCTAGTAGCAAGAACCTCACAGACAAGTCAAAGAATGCAACTTTTATCTACCGTGCTACACTTGATGAAGATGGGAACTTCAGATTGTATGCTCACCAATTCAAGGGAAATACTAGCTCAGGTGTGCAAACGCTGTGGAAAGCCATGGAGGGGGATAAATGTCAAGTCCCGCTTTGTGGCTTGAACAGTTACTGCTTCATCAAGAGCGACAAAGCCATGTGTCAGTGTTATCCTGGTTTCATCCGTATCAAGAGTGGTGGTAACGATACCAGGTTTCTCGACTGCGAACAGAACCACAGCAAAGATAATTGTGAGAGCATAGAGGACCCAACAACGATGTACAATATGACTTCCTTGAAGGATATCTACTGGGGTGGTTCTCCTTATTTGGTTGTGCCAATGGAGATGGAAACTTGCAAGAAGTCTTGTCAGAAAGACTGTGATTGCAGGGCGGTGTTATATAAGAGCGACATCTGCGAAAAATATAAGCTTCCACTTCTATATGGCAGAAGCTTTAAAGATGCATCAACGACGGCCTTCTTGAAGATGCCTTCAGGAATTGTCCTAAGTCCTACTTTAAACCAAACTGCTCTATCTCCAACAAAGCCCTGCCTCTTTGTTGATGACAAGAGAAGTCTTATAATGATTCTGTCCTTTACCCTGGGTTGGATTTCGTTTTTCGGTTTGGTCTTCGTATTGTATATTTTCATTATTTACAGGCGTCAAGTTCATAGGTATGCAATATTATCTGCAAGTGAAAATCTAGGATTTGTAGAAGAATGTTCCTTGCGTTCATTTTCCTTTGATGAACTTGTGAAATCAACTGGAGGCTTTGCAGAGGAGATAGGCAGAGGATCTTTTGGAGCGGTTTATAGAGGCACAATTGGTGACAGTAACAGAAGGGTTGCTGTGAGGAGACTTGAGAAATTTGTTGATGAAGGGGAGAGGGAATTCCAAGCAGAAATCACAGCCATTGCTCGAACTCATCATAGGAATCTGGTGAAGCTCATTGGTTTCTGCATTGATGGATCCAGGAAGCTTCTTGTTTTTGAATATCTCAGCAATGGGTCTCTTGCAGATCTTCTCTTCAAGTCTCATATGACTATGGCTTGGAAAGAGAGATTAAAGATTGCATTAGACGTGGCTAGAGGAGTCTTATATCTGCATGAGAAGTGTGATGTTCGGATTATCCACTGCAACATAAAGCCTCAGAATATACTCATGGATGAAGTGTGGACTGCAAAGATATCCGATTTTGGATTTGCAAGGCTGTTGAAACCCAGCTATTCAAGAATGAAGAAAATGGATGACAAGAGAAGTAGGTACTTGGCACCTGAATGGCAGAAGGATGAATCAGTGTCAGTTAAAGCTGATGTTTATAGTTTTGGGGTGGTGTTACTGGAGATTGCATTCCGTAGAAGCAGTATTGATATGAATGTTGCATCACCAGAAGAGATAGTTCTTTCCAGCTGGGTATATAAATGCTATGCGGCGGGGCAGTTGAATAAGCTTGTGGCAGATGATGAAGGCGAAGATGTAGATTGGAAAATACTTGAAAGAATGGTGAAGTTGGGGTTGTGGTGTGTTCAAGACAAACCATCTCTTCGTCCGACAATGAAGGATGTGATCTTAATGTTGGAAGGACTGAAAGATATTCCGGTTCCTCCCTCTCCAGCCTTCTTTGTTGAATAA 2640 0.4277 MSVLSSVVAALAAILRLDHSHSLSLVETLLLTHAGRVLLTVLVVVGKGVEEGECGTVGIVKTTQNPMASTPALLLLVLLMLFANETTAETNHTHLISIGSVISPTGTHASWASRSGLFAFGFYPHGNSYAVGIWLLNQPNHTIMWTHNRDSPSVPSNSTLRLTKEGGLLLLQGNEDPEFLTPLYYLYQAKVEVASASMLDSGNFVLYDKNFSMLWSSFHNSMPSDTILGGQNLTSGAKLVSSVSQSDHSSGHFWLRRQFDYVHLAACRVNSTCEPEDAYWAKNTYFEGYGYLQLSLSIEGSLCLQDYSSGSELECLASSKNLTDKSKNATFIYRATLDEDGNFRLYAHQFKGNTSSGVQTLWKAMEGDKCQVPLCGLNSYCFIKSDKAMCQCYPGFIRIKSGGNDTRFLDCEQNHSKDNCESIEDPTTMYNMTSLKDIYWGGSPYLVVPMEMETCKKSCQKDCDCRAVLYKSDICEKYKLPLLYGRSFKDASTTAFLKMPSGIVLSPTLNQTALSPTKPCLFVDDKRSLIMILSFTLGWISFFGLVFVLYIFIIYRRQVHRYAILSASENLGFVEECSLRSFSFDELVKSTGGFAEEIGRGSFGAVYRGTIGDSNRRVAVRRLEKFVDEGEREFQAEITAIARTHHRNLVKLIGFCIDGSRKLLVFEYLSNGSLADLLFKSHMTMAWKERLKIALDVARGVLYLHEKCDVRIIHCNIKPQNILMDEVWTAKISDFGFARLLKPSYSRMKKMDDKRSRYLAPEWQKDESVSVKADVYSFGVVLLEIAFRRSSIDMNVASPEEIVLSSWVYKCYAAGQLNKLVADDEGEDVDWKILERMVKLGLWCVQDKPSLRPTMKDVILMLEGLKDIPVPPSPAFFVE* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2592 879 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 67 876 - -
Amo13g2592 879 Gene3D - 224 366 IPR036426 -
Amo13g2592 879 ProSiteProfiles Protein kinase domain profile. 592 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2592 879 PIRSF SRK 64 879 IPR024171 GO:0004674
Amo13g2592 879 ProSiteProfiles Bulb-type lectin domain profile. 93 219 IPR001480 -
Amo13g2592 879 CDD STKc_IRAK 598 865 - -
Amo13g2592 879 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 67 876 - -
Amo13g2592 879 Gene3D Phosphorylase Kinase; domain 1 559 668 - -
Amo13g2592 879 SMART blect_4 102 221 IPR001480 -
Amo13g2592 879 SUPERFAMILY alpha-D-mannose-specific plant lectins 130 283 IPR036426 -
Amo13g2592 879 Gene3D - 101 219 IPR036426 -
Amo13g2592 879 Pfam Protein tyrosine and serine/threonine kinase 595 860 IPR001245 GO:0004672|GO:0006468
Amo13g2592 879 SUPERFAMILY Protein kinase-like (PK-like) 574 872 IPR011009 -
Amo13g2592 879 Pfam D-mannose binding lectin 142 234 IPR001480 -
Amo13g2592 879 Gene3D Transferase(Phosphotransferase) domain 1 669 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2592 Amo-Chr13 49486501 49502440 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2592 579 877 Receptor kinase-like Gene Family AT5G38280 39.088 7.53e-61 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo13g2592 PK_Tyr_Ser-Thr 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2592 - - aip:107630435 1525.38