Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2579 ATGGTTGGGGTTGCATCGATGGGGATAAAAATGCAAAGCTTCAAGACAGCTCAAACAAGCTCCCAACTGTATTGTCATTCTCCCTTCTTGCTTCGGGGAGACAATAACACCAACCGGAACCCAACGCGTTTCTCTGATCTTGGCGAGATTCAACATTCTGCACCTGTGTTTCATCATGAAGATGCTGTTGATTTAAGCTCAAGCTCAATGTTTAACATGAAGTCCAACAATGTAGCTGTTTCTGTTGCTGGCACTAACTTGCAGTATGGGACGTTGACCACGACGAACCTTGGGAGTGCAGAGGTTGGTGGTTCAAGTGGGGGTGGGTGCCTGGATACAGGGATAAACATGTACCAGCAAAAAGGGATGGCTATGCCAAACATGCCTTTAGGAAATGGTCATGTTGAGAATTGGGCTGATTCAGGCATGGCTGACAACAGCCAACAGACTGATGATACTTCCACAGATATTGATATCGATGACAGAAATCAATGCAATAGAGTTCAGCATGGGGCACCCACGGTTGTGGACTCGAAGGATGAGACAAAGATCAAAGCTGTTGACCAGAAGACTATGCGGAGGCTTGCTCAAAATCGAGAGGCAGCAAGGAAAAGTCGGTTAAGAAAAAAGGCATATGTACAGCAGCTGGAGAACAGCCGAGCCAAACTCTTACAATTGGAGCAAGAGCTTCAGCGAGCACGTCAGCAGGGTATATTTATTGCAACTAACGGGGATCATACTCATTCATCTCTTGGAAATGGGGCCTTAGCATTTGATATGGAGTATGGCCGGTGGGTTGATGAGCATCAACATTTGCTAAATGACCTTAGATCAGCCTTAAATTCTCAAATGGGAGATAATGAACTGCATCTTCTTGTTGATGGTGTCATGGCACATTATGACGAATTATTTCGGTTAAAGAGCATAGGAGCAAAGGCTGATGTCTTTCACATGCTCTATGGGATGTGGAAGACACCTGCCGAAAGGTGGCTGATGTGGCTCGGCGGATTCCGGTCGTCTGAACTTCTCAAGATAGTTAAGAACCACCTCGAGCCCTTAACAGAACAGCAGTTGTTGGGGATTTGTAATCTTCAGCAGTCTTCTCATCAGGCAGAGGATGCTTTGAATCAAGGTATGGAGGCGTTGCAACAATCTCTTTCGGACACACTTTCCTCGGCCGCCCTAGGACCCACCGGTGCCGGAAATGTTGCCGATTATATGAGCCAAATGGCTATTGCAATGGGTAAGATTGCCAATCTGGAGAGTTTCCTTCATCAGGCTGATGTATTGAAGCAAGAAATGCTGCAGCAGTTGCAACGAATTTTGACCACACGACAAATTGCACGAGCCCTCCTTGTAATGAATGATTACATTTCAAGACTAAGAGCTCTCAACTCATTATGGAACTCAATGATGAGTTGCAGCGACTCTCAAGTTTAG 1440 0.4583 MVGVASMGIKMQSFKTAQTSSQLYCHSPFLLRGDNNTNRNPTRFSDLGEIQHSAPVFHHEDAVDLSSSSMFNMKSNNVAVSVAGTNLQYGTLTTTNLGSAEVGGSSGGGCLDTGINMYQQKGMAMPNMPLGNGHVENWADSGMADNSQQTDDTSTDIDIDDRNQCNRVQHGAPTVVDSKDETKIKAVDQKTMRRLAQNREAARKSRLRKKAYVQQLENSRAKLLQLEQELQRARQQGIFIATNGDHTHSSLGNGALAFDMEYGRWVDEHQHLLNDLRSALNSQMGDNELHLLVDGVMAHYDELFRLKSIGAKADVFHMLYGMWKTPAERWLMWLGGFRSSELLKIVKNHLEPLTEQQLLGICNLQQSSHQAEDALNQGMEALQQSLSDTLSSAALGPTGAGNVADYMSQMAIAMGKIANLESFLHQADVLKQEMLQQLQRILTTRQIARALLVMNDYISRLRALNSLWNSMMSCSDSQV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2579 479 PANTHER TRANSCRIPTION FACTOR TGA9 48 469 - -
Amo13g2579 479 Gene3D - 189 238 - -
Amo13g2579 479 Coils Coil 209 236 - -
Amo13g2579 479 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 48 469 - -
Amo13g2579 479 CDD bZIP_HBP1b-like 190 242 - -
Amo13g2579 479 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Amo13g2579 479 Pfam Seed dormancy control 273 347 IPR025422 GO:0006351|GO:0043565
Amo13g2579 479 ProSiteProfiles DOG1 domain profile. 255 471 IPR025422 GO:0006351|GO:0043565
Amo13g2579 479 Pfam bZIP transcription factor 190 228 IPR004827 GO:0003700|GO:0006355
Amo13g2579 479 SMART brlzneu 186 249 IPR004827 GO:0003700|GO:0006355
Amo13g2579 479 SUPERFAMILY Leucine zipper domain 190 233 IPR046347 GO:0003700|GO:0006355
Amo13g2579 479 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2579 Amo-Chr13 48985879 48993385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2579 13 468 bZIP Transcription Factor Family AT1G68640 55.675 1.45e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g2579 DOG1 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2579 K14431 - gmx:100797393 645.966