Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2577 ATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCCGATGATCCCACCCTCCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCKTCGGGCCCTGCTCMGGCTGCTTCTACACCCAACATGGCGCCCATACCYGTGGCTCATGCGATGCAATCTGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCMAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCAWTGCCGCATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACAWTTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAACATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCMAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGATAGAGGAACCAGAGTTTAAAAATGAAAACCAGGTTGGAGTTTCGCCATCTAACTATCAACAAACCAATCAGAACATTCCTGCTGGAGTTAGATCCGGACCATCTGGGCAAGTGCCAGATGGAGGTGCAAATGCTGGTCACTCAAAACAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCYTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCARAAGATGGGACATGCAGATARTTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGGGCAGCAGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCACCTCTCTCAAGTAACCCCTTGAAAGGACCTCCGTATATGGGATCTTCAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCYGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTTGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGARCGGGGCTCTAAGGTTATTATWTTTTGTTCCACAAAGAGGTTATGTGATCARCTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCMCCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGAYAAYGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGRGGCGGCATGAGGGATGGTARCTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGKTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAGTAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTCGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGCGGTCGCAGTTACAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCRATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGYGGTGWCCCAGAAGATCCCAATGCTCTGGCATAG 3528 0.4938 MAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAXAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGXMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSXPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQXFGQGASQAQGSHSVQPQAHQFAPQNMHYMPYQPNMPQPVQXSSQHNMHGHSYENQQDFKSAFPKIEEPEFKNENQVGVSPSNYQQTNQNIPAGVRSGPSGQVPDGGANAGHSKQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADXFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMGSSPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNPLKGPPYMGSSDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGXFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRXDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRSRGRSRSRSPERVRTWDYSSRSRSRSRSSRSWSRSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGXPEDPNALA* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2577 1175 MobiDBLite consensus disorder prediction 46 255 - -
Amo13g2577 1175 Pfam DEAD/DEAH box helicase 521 691 IPR011545 GO:0003676|GO:0005524
Amo13g2577 1175 MobiDBLite consensus disorder prediction 995 1034 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 1 28 - -
Amo13g2577 1175 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 291 967 - -
Amo13g2577 1175 Pfam WW domain 22 52 IPR001202 GO:0005515
Amo13g2577 1175 CDD WW 23 54 IPR001202 GO:0005515
Amo13g2577 1175 SMART ww_5 21 54 IPR001202 GO:0005515
Amo13g2577 1175 MobiDBLite consensus disorder prediction 406 433 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 1069 1101 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 445 459 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 279 300 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 1069 1175 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 275 470 - -
Amo13g2577 1175 SMART helicmild6 752 836 IPR001650 -
Amo13g2577 1175 CDD SF2_C_DEAD 716 845 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 82 227 - -
Amo13g2577 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 875 IPR001650 -
Amo13g2577 1175 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Amo13g2577 1175 MobiDBLite consensus disorder prediction 240 255 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 1106 1130 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 322 353 - -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 872 1034 - -
Amo13g2577 1175 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Amo13g2577 1175 Pfam Helicase conserved C-terminal domain 728 836 IPR001650 -
Amo13g2577 1175 Gene3D - 707 877 IPR027417 -
Amo13g2577 1175 SMART ultradead3 516 719 IPR014001 -
Amo13g2577 1175 Gene3D - 472 706 IPR027417 -
Amo13g2577 1175 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Amo13g2577 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 702 IPR014001 -
Amo13g2577 1175 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Amo13g2577 1175 SUPERFAMILY WW domain 14 52 IPR036020 GO:0005515
Amo13g2577 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 852 IPR027417 -
Amo13g2577 1175 MobiDBLite consensus disorder prediction 1136 1155 - -
Amo13g2577 1175 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 291 967 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2577 Amo-Chr13 48858467 48864895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2577 485 874 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 3.85e-67 230