Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2571 ATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATATGTCTCAGGCTGAAATTCAAACAGCACTTAGCAGTTTGTTCCAGGAAGATTTCTCTTCTGGTCGGCAAATAATGGATCATCAGAATAATCCACCCTCATCATCTTCATCTTCTTTGAGATCATTATCTACAACAGCTGGCAGCCCTGAATACTCCTCTCTCCTATTCAACATTCCTCCGGCCGGAACACTCGGAACCGGGGGAGTCACCACTGGCGGAGCCACCGCGGGAGCAATAGTACCTAACACAATGTCTCCTTTGTCATCCAACACACAATCAGCATTGCTAACTAATTACGTATTCCCGAGTCATCACCAGGAGATCGAAAACGAGACACTAATGAGAGTGTTCCTGAACGCTATATCACCACAACAGCATCAAAACTTGCCTTATAACATCACTGTGGTGCACCCTGAGGGTAGCGCTTTCAAGAGGTACAGGACGGAACCGGAACCGGGACCGGAACGGGGGCCGGAGAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGATCGTTAGCGTTCTTTAGGAGCATCAATGCTATGAGAATAAGGGAACGGATTCAAGCCACTCGCCCCTCTAGCACACAGCTTCATCATATGATAGCTGAGAGAAGAAGGCGCGAGAAGCTCAACGATAATTTTCAGGCTCTTAGAGCATTGCTTCCTCCCGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCGGAAATTGAAAAGCTGAGGATAAGAAATCACGAGTTAGAATCACGTTTGCCTGAAAGCAGCAAAGAATCAAGCGCTACCGATCAAGAAATTAGCAAAACTATGTTATTGGTGCCACCAAACGAGAGATTTCATGTTCAAATTTCAGATGTGCCACAATCATCATCATCATCATCGTCAGAAGAGAGAAGGGTGGATTTGCATGTGGCTTTGAGGGGGCAAATTTCTCAGATTGATGCGGTGATTCGGTTATTGGAGTTCTTGAAACTGGCTCAGAATGTGAGCTTGGTTACCATGACAACAAATACCAATAATGTTGGTCAAGGGAATAATAATTATATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAGGAAGCAGTGAAAAGAGTTGTAGGTGATTTGGCACAGTTCCAAGTTGACCATTAG 1233 0.4453 MGCNKGEIELGFLNMSQAEIQTALSSLFQEDFSSGRQIMDHQNNPPSSSSSSLRSLSTTAGSPEYSSLLFNIPPAGTLGTGGVTTGGATAGAIVPNTMSPLSSNTQSALLTNYVFPSHHQEIENETLMRVFLNAISPQQHQNLPYNITVVHPEGSAFKRYRTEPEPGPERGPESLRSRQSLMKRSLAFFRSINAMRIRERIQATRPSSTQLHHMIAERRRREKLNDNFQALRALLPPGTKKDKASILTTAKETLSSLMAEIEKLRIRNHELESRLPESSKESSATDQEISKTMLLVPPNERFHVQISDVPQSSSSSSSEERRVDLHVALRGQISQIDAVIRLLEFLKLAQNVSLVTMTTNTNNVGQGNNNYINQLTFRLRILEGSEWDVSAFQEAVKRVVGDLAQFQVDH* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2571 410 SMART finulus 214 263 IPR011598 GO:0046983
Amo13g2571 410 MobiDBLite consensus disorder prediction 159 178 - -
Amo13g2571 410 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 403 IPR044658 -
Amo13g2571 410 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 403 - -
Amo13g2571 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983
Amo13g2571 410 MobiDBLite consensus disorder prediction 37 59 - -
Amo13g2571 410 Pfam Helix-loop-helix DNA-binding domain 212 257 IPR011598 GO:0046983
Amo13g2571 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
Amo13g2571 410 Coils Coil 247 281 - -
Amo13g2571 410 CDD bHLH_AtbHLH_like 213 265 IPR045239 -
Amo13g2571 410 Gene3D - 207 282 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2571 Amo-Chr13 48459214 48464656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2571 1 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.757 8.53e-66 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g2571 HLH 3.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2571 - - ahf:112790359 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2571 13 48459214 48464656 Amo03g1426 03 36269153 36271441 hybridization