Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2569 ATGATGGAAGGTGTGTTCTTCCTGCCAGAAGCCGCCAGAACCGGTTATCTTCGCTCTATAGTGCAGTCTGTTGGCTGCGCCTACATTTGTCTCTGGTCCTTTGATCCCACTTCTTCTCCTAATAATCGGTTGTTCTTCTTGGATGGTTTCTACAATAACGTCAGAAACAACCAACAAGCAAGCTCTTCTTTGGGGAGTGTGGCGCAACAACTCTTTAATCAGTTCAGGACTTTAAGATTTGATGCAAATGATGACCGTATTCCTGGACTAGCTTTTAGGAACAACCGTCCGTACCTAGAGGTGCAGCAACCGGAACTTCTCAGACTCGCATGGACTCAAATACAAAAACAATTCTTTCAGGAAGCAAGGATTAAGACTGCTGTATTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATATGTCTCAGGCTGAAATTCAAACAGCACTTAGCAGTTTGTTCCAGGAAGATTTCTCTTCTGGTCGGCAAATAATGGATCATCAGAATAATCCACCCTCATCATCTTCATCTTCTTTGAGATCATTATCTACAACAGCTGGCAGCCCTGAATACTCCTCTCTCCTATTCAACATTCCTCCGGCCGGAACACTCGGAACCGGGGGAGTCACCACTGGCGGAGCCACCGCGGGAGCAATAGTACCTAACACAATGTCTCCTTTGTCATCCAACACACAATCAGCATTGCTAACTAATTACGTATTCCCGAGTCATCACCAGGAGATCGAAAACGAGACACTAATGAGAGTGTTCCTGAACGCTATATCACCACAACAGCATCAAAACTTGCCTTATAACATCACTGTGGTGCACCCTGAGGGTAGCGCTTTCAAGAGGTACAGGACGGAACCGGAACCGGGACCGGAACGGGGGCCGGAGAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGATCGTTAGCGTTCTTTAGGAGCATCAATGCTATGAGAATAAGGGAACGGATTCAAGCCACTCGCCCCTCTAGCACACAGCTTCATCATATGATAGCTGAGAGAAGAAGGCGCGAGAAGCTCAACGATAATTTTCAGGCTCTTAGAGCATTGCTTCCTCCCGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCGGAAATTGAAAAGCTGAGGATAAGAAATCACGAGTTAGAATCACGTTTGCCTGAAAGCAGCAAAGAATCAAGCGCTACCGATCAAGAAATTAGCAAAACTATGTTATTGGTGCCACCAAACGAGAGATTTCATGTTCAAATTTCAGATGTGCCACAATCATCATCATCATCATCGTCAGAAGAGAGAAGGGTGGATTTGCATGTGGCTTTGAGGGGGCAAATTTCTCAGATTGATGCGGTGATTCGGTTATTGGAGTTCTTGAAACTGGCTCAGAATGTGAGCTTGGTTACCATGACAACAAATACCAATAATGTTGGTCAAGGGAATAATAATTATATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAGGAAGCAGTGAAAAGAGTTGTAGGTGATTTGGCACAGTTCCAAGTTGACCATTAG 1620 0.4457 MMEGVFFLPEAARTGYLRSIVQSVGCAYICLWSFDPTSSPNNRLFFLDGFYNNVRNNQQASSSLGSVAQQLFNQFRTLRFDANDDRIPGLAFRNNRPYLEVQQPELLRLAWTQIQKQFFQEARIKTAVFMGCNKGEIELGFLNMSQAEIQTALSSLFQEDFSSGRQIMDHQNNPPSSSSSSLRSLSTTAGSPEYSSLLFNIPPAGTLGTGGVTTGGATAGAIVPNTMSPLSSNTQSALLTNYVFPSHHQEIENETLMRVFLNAISPQQHQNLPYNITVVHPEGSAFKRYRTEPEPGPERGPESLRSRQSLMKRSLAFFRSINAMRIRERIQATRPSSTQLHHMIAERRRREKLNDNFQALRALLPPGTKKDKASILTTAKETLSSLMAEIEKLRIRNHELESRLPESSKESSATDQEISKTMLLVPPNERFHVQISDVPQSSSSSSSEERRVDLHVALRGQISQIDAVIRLLEFLKLAQNVSLVTMTTNTNNVGQGNNNYINQLTFRLRILEGSEWDVSAFQEAVKRVVGDLAQFQVDH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2569 539 MobiDBLite consensus disorder prediction 288 307 - -
Amo13g2569 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Amo13g2569 539 MobiDBLite consensus disorder prediction 166 188 - -
Amo13g2569 539 SMART finulus 343 392 IPR011598 GO:0046983
Amo13g2569 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 408 IPR036638 GO:0046983
Amo13g2569 539 Pfam Helix-loop-helix DNA-binding domain 341 386 IPR011598 GO:0046983
Amo13g2569 539 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 2 532 - -
Amo13g2569 539 Coils Coil 376 410 - -
Amo13g2569 539 Gene3D - 336 411 IPR036638 GO:0046983
Amo13g2569 539 CDD bHLH_AtbHLH_like 342 394 IPR045239 -
Amo13g2569 539 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 2 532 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2569 Amo-Chr13 48325517 48330636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2569 6 534 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.544 8.82e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g2569 HLH 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2569 - - adu:107479037 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2569 13 48325517 48330636 Amo03g1219 03 28290568 28293155 hybridization
Amo01g2748 01 98207480 98210116 Amo13g2569 13 48325517 48330636 PCT
Amo13g2569 13 48325517 48330636 Amo01g2748 01 98207480 98210116 PCT