Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2558 ATGATGATACCAAGTTATCGTTATTCTCATCATCATCCTATTCCTTTTGATCTCAATGAAGAACATCACCTCTTCACTACTACTACATATCCTCAACTCTCTTCTCCTTCTTCTTCTTTATCATCTTATTCTTATTGGGACCAACATCCAAACCACTTACAAATAACTCATCAACAGGCTGAGAAGATTCATGTTCCTTCTAGTGGAGGATCATGGGATCATATTCATGACCACAGAAAAAAAGAAGAAAAAGAAGAAGAAGAAGAAGAGGATGGAAACAAGAAGAGTAGTAAACTGCTCAAGTTGAAAATTTTGAAGAAAGAAGAAAGGAATGAAAATCATCATCTTGATAATCAAGCTCATCATGATGAGGAGGATCATGGTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATCATGGGTGGTTCTGATACTAATAATTTCAGGTTAAGGTTTGATGAAGAGGGACCAAAGCAGCAAGCGCCGCTATCCCCTTTAGGAACTGATAATAGCAGCAGCAACAGTAACAACAACAACTCTTCTTCAAACCGTCATGAAAATAATAATAATATGATTGTTAGGGTTTGTTCTGATTGCCACACCACAAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGAGAGCTGCCGCGGCGGCGGCGGCGGCGGAGGTTGCAGCATCAGAGAACGATACAACTCTCATGGCTTCTACTGATGATGATGATGGATCTCTTCATGGTATGAAGAAGAAGGAAAAGAAGTTACACAAGCACAACAACAAAGATAAGAAGTTGAAAGCCAAGTGTAGTGCACCAAATCAGTTGAAAAAGAAGCACAAAATTGGAACCAATAACAATAATAATACTAATAAATTATCTCATAGAGGAAGAAAGAAGGTTGGTTTTGAAGACTTGACAATAAGTTTGAGCAAGAACTTGGCTTTAAATGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCCTTATCCTATGGTTTACTTCATGGATTTCCCTCAGATCGTTACTTAGATTAA 1089 0.393 MMIPSYRYSHHHPIPFDLNEEHHLFTTTTYPQLSSPSSSLSSYSYWDQHPNHLQITHQQAEKIHVPSSGGSWDHIHDHRKKEEKEEEEEEDGNKKSSKLLKLKILKKEERNENHHLDNQAHHDEEDHGSVKWMSSKMRIMGGSDTNNFRLRFDEEGPKQQAPLSPLGTDNSSSNSNNNNSSSNRHENNNNMIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAAAAAAAEVAASENDTTLMASTDDDDGSLHGMKKKEKKLHKHNNKDKKLKAKCSAPNQLKKKHKIGTNNNNNTNKLSHRGRKKVGFEDLTISLSKNLALNVFPHDEKEAAILLMALSYGLLHGFPSDRYLD* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2558 362 MobiDBLite consensus disorder prediction 156 189 - -
Amo13g2558 362 MobiDBLite consensus disorder prediction 109 128 - -
Amo13g2558 362 CDD ZnF_GATA 195 223 IPR000679 GO:0006355|GO:0043565
Amo13g2558 362 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 2 354 - -
Amo13g2558 362 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 230 - -
Amo13g2558 362 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 2 354 - -
Amo13g2558 362 Coils Coil 263 283 - -
Amo13g2558 362 ProSiteProfiles GATA-type zinc finger domain profile. 194 226 IPR000679 GO:0006355|GO:0043565
Amo13g2558 362 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
Amo13g2558 362 Gene3D - 192 235 IPR013088 GO:0006355|GO:0008270
Amo13g2558 362 MobiDBLite consensus disorder prediction 163 189 - -
Amo13g2558 362 MobiDBLite consensus disorder prediction 292 306 - -
Amo13g2558 362 MobiDBLite consensus disorder prediction 71 100 - -
Amo13g2558 362 SMART GATA_3 190 241 IPR000679 GO:0006355|GO:0043565
Amo13g2558 362 Pfam GATA zinc finger 196 229 IPR000679 GO:0006355|GO:0043565
Amo13g2558 362 MobiDBLite consensus disorder prediction 57 100 - -
Amo13g2558 362 MobiDBLite consensus disorder prediction 288 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2558 Amo-Chr13 47296652 47299243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2558 100 354 C2C2-Gata Transcription Factor Family AT4G26150 38.168 2.56e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo13g2558 GATA 4.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2558 - - adu:107478822 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2777 01 98541305 98542848 Amo13g2558 13 47296652 47299243 PCT
Amo13g2558 13 47296652 47299243 Amo01g2777 01 98541305 98542848 PCT