Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2549 ATGGCAGTGGATCTGGTAGGAGTTCCACGGATGAGGATGGAACAACAAGAACAAGTTGCAATTCAAGAAGCTGCTTCGGCTGGCTTGAAGAGCATGGAGCATCTCATTCGCCTCCTCTCTTCTCAATCTCAATCTCATTCTCCTTCTACTTCCTCTTCCCCTCTCCCCAACAATAATAACAACCTCAACTGCTCCCAACTAACCGACTTCACAGTTTCCAAGTTCAAGCAAGTCATCAACATCCTTAACCGCACTGGCCACGCCCGCTTCCGCCGCGCACCACCACAACAACAGCCTTCCCCTCCCCCTCAGGCCCAGCCTGGAACCACCACCGCCTTCACACTAGATTTCCACAAGCCCACCATTCTGAACTCCAAGCCCGCCGTCAACAAGGATGTCGACCAAGAAATGGAACTTAGTATTTCCCCTCATGTTTCCACCACTACCTCCTCCACCTTCATGTCCTCCATCACCGGCGATGCTAGCGTCTCCGACGGCAAGATTGGCCCCTTCCTTACCCTTCCAGCTCCGCCTCCCCCTCCCGTTGCCTCCGGAAAACCTCCTCTCTCTTCTTCTCACCGGAAAAGGTGCCATGACGCAACCCTCTCCGGAAAAGCCTCCTCCTCCGCTCATTGCCATTGCTCCAAGAGAAGGAAATCACGTGTGAAACGAACGATCCGTGTGCCGGCTATAAGTTCGAAGATCGCCGATATACCGCCTGACGAATTCTCGTGGAGAAAGTACGGTCAGAAACCGATCAAGGGCTCACCTTACCCTCGTGGTTACTATAAGTGCAGCACCGTGAGAGGATGTCCGGCCAGGAAGCATGTGGAGAGAGCACAAGACGATCCGAAGATGCTAATAGTGACGTACGAAGGGGAACACCGTCACAATCCCCAGCCACACTCGCCGGAAACTGCCGGCACTCCCGCCGTCACCTCTGCTGGTGGTTTTAGCCTCCGGTCGTGTTGA 972 0.5432 MAVDLVGVPRMRMEQQEQVAIQEAASAGLKSMEHLIRLLSSQSQSHSPSTSSSPLPNNNNNLNCSQLTDFTVSKFKQVINILNRTGHARFRRAPPQQQPSPPPQAQPGTTTAFTLDFHKPTILNSKPAVNKDVDQEMELSISPHVSTTTSSTFMSSITGDASVSDGKIGPFLTLPAPPPPPVASGKPPLSSSHRKRCHDATLSGKASSSAHCHCSKRRKSRVKRTIRVPAISSKIADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHNPQPHSPETAGTPAVTSAGGFSLRSC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2549 323 MobiDBLite consensus disorder prediction 175 195 - -
Amo13g2549 323 MobiDBLite consensus disorder prediction 91 111 - -
Amo13g2549 323 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g2549 323 SUPERFAMILY WRKY DNA-binding domain 237 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g2549 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 301 IPR044810 GO:0003700
Amo13g2549 323 MobiDBLite consensus disorder prediction 302 323 - -
Amo13g2549 323 Pfam Plant zinc cluster domain 194 237 IPR018872 -
Amo13g2549 323 Gene3D WRKY domain 227 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g2549 323 MobiDBLite consensus disorder prediction 295 323 - -
Amo13g2549 323 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g2549 323 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 16 301 - -
Amo13g2549 323 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g2549 323 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2549 Amo-Chr13 46775999 46778313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2549 1 298 WRKY Transcription Factor Family AT2G24570 51.077 1.64e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g2549 WRKY 5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2549 - - gmx:732587 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2549 13 46775999 46778313 Amo13g2549 13 46775999 46778313 ECH
Amo13g2549 13 46775999 46778313 Amo03g1120 03 25340285 25342906 hybridization
Amo01g2789 01 98642999 98644438 Amo13g2549 13 46775999 46778313 PCT
Amo13g2549 13 46775999 46778313 Amo01g2789 01 98642999 98644438 PCT