Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g2529 | ATGATAGTTGGAGATGGAATTGACGCTACCGTTGTCACTGCTGACGGTAACGCACAAGATGGATCCACCACTTTCCGTTCAGCTACATTTGGGGTTTCCGGTGACGGGTTCATAGCGCGGGACATAACCTTTGAGAACACGGCGGGTCCACGGAAGCACCAGGCGGTGGCTCTCCGGTCCGGCTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACAGCTTATACGCCTACGCCCAGCGCCAATTCTACCGCGACTGCGACGTGTACGGCACCGTGGACTTCATCTTCGGCGACGCCGCCTGCGTCCTCCAGAACTGCAACATCTACGTCCGAAGACCCATGGGCAACCAGGACATCACCGTCACCGCCCAAGGTAGAACCGATCCCAACGAGAACACCGGCATCGTGATCCACAACTGCCGCATAACTGCTGCCGGCGACATGAGATCCGTTCAGGGCTCCTTCAAGACCTTCCTTGGGCGTCCATGGCAGAAGTACTCAAGAACCGTGATCATGAAGAGCGGCCTAGACGGCTTGATTAACCCGGCCGGTTGGAAACCATGGAGTGGAAGCTTTGCTCTCAGCACACTCTATTATGGTGAGTACATGAACACTGGTCCTGGTGCTAACACTGCTGGCAGGGTTCACTGGCCTGGCTTTCATGTTATTAGTAGTCCCTCTGAAGCTGTCAAGTTTTCTGTTGGTGATTTCTTGGCTGGTGGTTCATGGATTCCCGGCACTGGTGTCCCCTTTGATGCAGGTTTGTGA | 783 | 0.5543 | MIVGDGIDATVVTADGNAQDGSTTFRSATFGVSGDGFIARDITFENTAGPRKHQAVALRSGSDHSVFYRCSFKGYQDSLYAYAQRQFYRDCDVYGTVDFIFGDAACVLQNCNIYVRRPMGNQDITVTAQGRTDPNENTGIVIHNCRITAAGDMRSVQGSFKTFLGRPWQKYSRTVIMKSGLDGLINPAGWKPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVISSPSEAVKFSVGDFLAGGSWIPGTGVPFDAGL* | 261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g2529 | 260 | PANTHER | PECTINESTERASE | 1 | 259 | - | - | |
| Amo13g2529 | 260 | Gene3D | - | 1 | 260 | IPR012334 | - | |
| Amo13g2529 | 260 | PANTHER | PECTINESTERASE INHIBITOR 5-RELATED | 1 | 259 | - | - | |
| Amo13g2529 | 260 | SUPERFAMILY | Pectin lyase-like | 1 | 259 | IPR011050 | - | |
| Amo13g2529 | 260 | ProSitePatterns | Pectinesterase signature 2. | 93 | 102 | IPR033131 | - | |
| Amo13g2529 | 260 | Pfam | Pectinesterase | 1 | 245 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g2529 | Amo-Chr13 | 45602552 | 45605024 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo13g2529 | 1 | 260 | Carbohydrate Esterase | AT3G60730 | 66.154 | 1.55e-128 | 372 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g2529 | - | - | gmx:100816802 | 453.366 |