Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2524 ATGATGAGCAACACCATTCTTGTTTTCTTTTTCTTCTTCTTTACAACTCTGCAGCAATCCTACTCTGAAAACAATGACACCTCATACTCCATTTGCAGCAAACCATTCAGCTGCGGAACACGCATCACCAACGCATCCTACCCTTTCTGGGGAGGGAACAGACCCCAGTTTTGTGGAACCAATGGTTTCAAACTCACCTGCACCAACAACACTACTTCACTTCAAATTGCTTCGCAAAAGTTCCATGTACTTGCCATAAACCAAACTCAGAGTACCATGAGACTCGTCAGAACAGACTTTGTCTATGATCGCTGTTCTTCCAACCTCACCAACACTTCTCTCAATGGAAGTCCCTTTCATTTTCTCCCAAACACTCTTCACAATATCACTATATTCTACGATTGTCCATCTGGGAGTCATTACACCAACAATTTTACGTGCCAGAATGATAGCAGCAAACGTGGTTTCTATGCTGTCAATGTAACTCGGGCTCAGCAGTTTCGGAACTGTGGGGTTAGTGTTCAAGTGCAAGTTTCAGGTTCTGTAGGGAATAATCTCAAGGGAGCATTGGATGAAGGGTTTGATGTTCAGTATGATGCAGACTTGTCTTCAAAGTGCAAAACATGCACGGAATCTGGAGGAGTATGTGGCACCAATAACGAAACTGATTCCTCTCAGTTTTCATGTTATTGCCTCACTGGAACTCATGCTTCTGCTTGTTCTTCTCATAAAAGTAGTTCGAAGCACAAAGTCTTGAAGCTAGTTTTAGGTTTCCTAGGAACTGGAATTGGACTACCTCTGATTGCTGTGATCATATGCCGCAATAAAGCTAAGGTGTGGAAGTTCATAAAGAATCAATTAGGATTGATGAATAAGCATGATCGAAATATAGAAGCCTTTCTAGAAAGCCAAGGTCCACTTGGTATAAAAAGATATAATTTCTCTGACGTGAAGAAAATGACCAACTCCTTCAAAGTCAAACTCGGAGAAGGAGGTTATGGTTCTGTTTACAAGGGAAAATTACCCAATGGTTCCTCTGTGGCTGTAAAGATGCTCAATGACTCCAAAAGGAATAACGGCGAAGAATTCGTCAATGAAGTTGCCAGCATTAGCAAAACATCTCATGTTAATGTTGTCACTCTTGTCGGATTTTGCCTCGAAGGAAGCAGAAAAGCTCTCGTCTATGAATTCATGCCTAATGGTTCTCTCGAAAAATTTGTTCACAAAAAGGCCGATCAAAGCACTCCGGCCCTGAGTTGGGACAAGTTGTACCAGATTGCAATCGGAATAGCTAAAGGATTGGAGTACTTGCACAAAGGATGCAACACTAAGATTGTGCATTTTGATATTAAGCCTCATAATATTCTTTTGGACGAAAATTATCGTCCAAAAATATCAGATTTTGGACTAGCTAAACTCGGCACAAAGGATGAGAGCATTATGTCAATGTCATATGCTAGAGGCACAGTTGGATATGTGGCTCCGGAGATGTGCAACAAGAGTTTCGGAGGTGTATCTCATAAATCTGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTTGGAGGGCAGAAGAATGCGAATGTTGAAGCGAGTCGCTCGAGCGAGATATACTTTCCACAATTGGTGATTTACAAGAAGCTTGAGGTTGGGAGTGATTTGGGGCTTGATGGGGTGATGAGCACAGAAGAAAATGAGTTGGCGAAGAAAATGATTATGGTGGGTTTGTGGTGCATTCAGACAATTCCCTCTCAAAGGCCAACCATAAGCAGAGTGATTGACATGTTGGAAGGTAGCATGGAGTCTATGGAAATGCCACCAAAACCAACTATGTCATCTCCTCCAAGATCCGCAACAGACTTTTCCACTGCATCATTGTCAGGGGATAGTTGTTGA 1899 0.4207 MMSNTILVFFFFFFTTLQQSYSENNDTSYSICSKPFSCGTRITNASYPFWGGNRPQFCGTNGFKLTCTNNTTSLQIASQKFHVLAINQTQSTMRLVRTDFVYDRCSSNLTNTSLNGSPFHFLPNTLHNITIFYDCPSGSHYTNNFTCQNDSSKRGFYAVNVTRAQQFRNCGVSVQVQVSGSVGNNLKGALDEGFDVQYDADLSSKCKTCTESGGVCGTNNETDSSQFSCYCLTGTHASACSSHKSSSKHKVLKLVLGFLGTGIGLPLIAVIICRNKAKVWKFIKNQLGLMNKHDRNIEAFLESQGPLGIKRYNFSDVKKMTNSFKVKLGEGGYGSVYKGKLPNGSSVAVKMLNDSKRNNGEEFVNEVASISKTSHVNVVTLVGFCLEGSRKALVYEFMPNGSLEKFVHKKADQSTPALSWDKLYQIAIGIAKGLEYLHKGCNTKIVHFDIKPHNILLDENYRPKISDFGLAKLGTKDESIMSMSYARGTVGYVAPEMCNKSFGGVSHKSDVYSYGMMLLEMVGGQKNANVEASRSSEIYFPQLVIYKKLEVGSDLGLDGVMSTEENELAKKMIMVGLWCIQTIPSQRPTISRVIDMLEGSMESMEMPPKPTMSSPPRSATDFSTASLSGDSC* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2524 632 Pfam Protein kinase domain 325 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2524 632 MobiDBLite consensus disorder prediction 615 632 - -
Amo13g2524 632 MobiDBLite consensus disorder prediction 603 632 - -
Amo13g2524 632 Pfam Wall-associated receptor kinase galacturonan-binding 32 97 IPR025287 GO:0030247
Amo13g2524 632 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Amo13g2524 632 Gene3D Phosphorylase Kinase; domain 1 298 397 - -
Amo13g2524 632 ProSiteProfiles Protein kinase domain profile. 322 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2524 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Amo13g2524 632 SMART serkin_6 322 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2524 632 CDD STKc_IRAK 328 599 - -
Amo13g2524 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 628 IPR045874 GO:0004672
Amo13g2524 632 Pfam Wall-associated receptor kinase C-terminal 159 231 IPR032872 -
Amo13g2524 632 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 4 628 - -
Amo13g2524 632 SUPERFAMILY Protein kinase-like (PK-like) 303 598 IPR011009 -
Amo13g2524 632 Gene3D Transferase(Phosphotransferase) domain 1 398 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2524 Amo-Chr13 45480065 45483695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2524 32 612 Receptor kinase-like Gene Family AT5G38260 41.080 2.49e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo13g2524 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2524 - - vra:106766588 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4019 05 107864547 107867528 Amo13g2524 13 45480065 45483695 PCT