Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2519 ATGGATCCTCGACCAATTACACGATGTGGGTGTGGTGCACAAATAAAGGTTCACGTTGATCAAAGCACTGGCCGTTGGTTCGTAGATAAGTTTTGTGATGAACACAACCATGAGATGCTAACTGCAAGGTTCCGGGGGTTGTTGCGTTCTCATAGAGTAATCAAGGAAGGGGACATGCATCAAATTAACTCGATGAGAAAAGCTGGGATGCGTGTGCCAACCATATTTCGTGCATTTCCCACCCAATGCGGGGGATTTGAGACACACTATCTCGAGTTCATGAGAAGAAGAGAGCTAGTCGCCGATTATAGATCTGTGTATGGGCAACCTATTTTTAAGTCGAAGTTGGAGGCCTTGGAAAGCTATGCAGCAATAGTATACACGAAAGATGTTTTTGAACTATTCCGGGAGGTCCTCCTTTTGTCTAGCAATGTAAGAGTTGTATCTTGCAAGAAAACTAGCACGTGTTCCCTGTTTGAGGTTACCATGTACTGCCGGGACCGGTCCTGGAGTGTGGCTTGGGACAAGGCGGATGACGAATTTACTTGCTCATGTTTGCGTATGGAATCATTTGGCATTCCTTGTGTGCACATGGTGGGGGTGTTTGTTTATCTGAACATCACTCAGCTTCCGGTGAAGACCATATGCGAACGATGGACGAAGAAGGCCAAGCAAGCGGCAGTGGACCCATCTGGACAGGTAGGCGAGATTCCTGATGCTGCGTATATGAGCATGCACGCAGCTTTGCTAAATGATTGTAGAGAGTTAATCAAGTTGGCCTGCCAGTACTTTGAAGACTACTCTGAACTGAAATCCATGATACGAAACCAAAGTAATGTGTTGAGAGAGAAGCATCGGTTAAGGGTTAGCATAGCTGATTGCGGAGAAAAGGTATCCGTTCGCGATCCGCTGCGGGCGAGACATAAGGGATGCGGCCAACGAGGGTTAACTGCTAGGGAAAAAACTCGGCGTGTGCAACGTTGCAGTAAGTGTGGTAAAGCTAGCCATAACTCCAGGAAGTGTGCGGAGTTCGGAAGCGAAAGGCGCAGGGGCATGGCCACAGCGATGGAGGGTTGGGAGAACACGTCGGCGGCAAAGGAGGGTAACTACACGGATGAAATGAATGTGAGTGGCATTTACATTTTACAAGAAAGTTATCTGAATTTGTGTGTTGCTTATTTCGGTATGACATGA 1194 0.4732 MDPRPITRCGCGAQIKVHVDQSTGRWFVDKFCDEHNHEMLTARFRGLLRSHRVIKEGDMHQINSMRKAGMRVPTIFRAFPTQCGGFETHYLEFMRRRELVADYRSVYGQPIFKSKLEALESYAAIVYTKDVFELFREVLLLSSNVRVVSCKKTSTCSLFEVTMYCRDRSWSVAWDKADDEFTCSCLRMESFGIPCVHMVGVFVYLNITQLPVKTICERWTKKAKQAAVDPSGQVGEIPDAAYMSMHAALLNDCRELIKLACQYFEDYSELKSMIRNQSNVLREKHRLRVSIADCGEKVSVRDPLRARHKGCGQRGLTAREKTRRVQRCSKCGKASHNSRKCAEFGSERRRGMATAMEGWENTSAAKEGNYTDEMNVSGIYILQESYLNLCVAYFGMT* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2519 397 Pfam SWIM zinc finger 182 205 IPR007527 GO:0008270
Amo13g2519 397 SMART 26again6 181 208 IPR006564 GO:0008270
Amo13g2519 397 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 94 288 IPR031052 GO:0006355
Amo13g2519 397 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 74 IPR031052 GO:0006355
Amo13g2519 397 PANTHER OS03G0181600 PROTEIN 94 288 - -
Amo13g2519 397 PANTHER OS03G0181600 PROTEIN 5 74 - -
Amo13g2519 397 ProSiteProfiles Zinc finger SWIM-type profile. 170 206 IPR007527 GO:0008270
Amo13g2519 397 Pfam FAR1 DNA-binding domain 3 40 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2519 Amo-Chr13 45432063 45434054 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo13g2519 FAR1 5.1e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2519 - - aip:107632990 623.239