Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2507 ATGTTCACATCAAGGAAGAAAATCCACAAAGACAAGGATGCTGAGCCAACTGAGTTTGAAGAGTCAGTTGGGCAGGCATTGTTTGATCTTGAAAACACCAACCAGGATCTTAAGAGTGACCTCAAGGATTTATATATCAATTCCGCAGTTCAAGTTGATGTTTCTGGGAAGAACCGCAAGGCTGTTGTTATCCATGTCCCTTACAGATTGAGGAAAGGCTTCAGGAAGATTCATGTTAAGCTTGTTAGGGAGCTTGAGAAGAAGTTTAGCGGCAAGGATGTAGTCTTGCTTGCCACCCGGAGGATAGTGAGACCTCCAAAGAAGGGTTCTGCCGTTCAACGCCCCCGAACCCGCACCTTGACTGCTGTTCACGAGGCAATGCTGGAGGACATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTGAGGTATAGACTCGATGGATCCAAAGTTATGAAGGTTTTCTTGGATCCAAAGGAGCGAAACAACACGGAGTACAAGTTGGAGACCTTTTCTGCTGTGTACAGGAAGCTGTCTGGCAAAGATGTCGTGTTCGAGTATCCCATAGCAGAGAATTAG 579 0.4611 MFTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQDLKSDLKDLYINSAVQVDVSGKNRKAVVIHVPYRLRKGFRKIHVKLVRELEKKFSGKDVVLLATRRIVRPPKKGSAVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYRLDGSKVMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPIAEN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2507 192 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo13g2507 192 Coils Coil 27 47 - -
Amo13g2507 192 Pfam Ribosomal protein S7e 7 187 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo13g2507 192 ProSitePatterns Ribosomal protein S7e signature. 80 93 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo13g2507 192 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2507 Amo-Chr13 45283241 45286980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2507 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 76.963 5.64e-111 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2507 K02993 - gmx:100527642 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2507 13 45283241 45286980 Amo03g1072 03 23449300 23452431 hybridization