Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2505 ATGATGTCTAGTTCAAAGAGTGTCAGTAGCAGTGGTAGTGAAGATGACAATGAAATTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATCTTCTCACACAATCCATTGCTAACCAAGGCGAAGGCCGTTGGAATTTACTTGCTAAATGTTCAGGATTAAAGAGAACAGGAAAAAGCTGCAGATTAAGGTGGCTGAATTATCTAAAGCCGGATGTAAAGAGAGGAAATTTAACACCACAGGAGCAGCTTTTGATTCTTGAACTTCACTCAAAGTGGGGGAACAGGTGGTCAAAGATTGCACAGCATTTACCGGGCAGGACAGACAATGAAATCAAGAACTACTGGAGAACCAAGATTCAGAAACAAGCAAGGCATTTGAAAATCGACACCGATAGCAGAGAGTTTGAAGAACTAGTGAGGCGTTTTTGGATTCCAAGATTGCTTCAGAAAGCAAGAGAATCGTCCTCTTCTTCAGCCCTGCCAATCCAAAACCAAGCAACTATGCCTGTTTCTCAGTATTCAGCAGCAGCAATAACACCACCACCTTGTGTGCACCCAACATGTCCAAATTATTTGGATCAACGACTTGAGCAACACAGCAATGGTTCATGCGTATCCTTCTCTGAACCAAAATTGCCTCAGTTATTGGGATACAACTCCAACCATTTTGGTAATGGCTTGGATACCGATGAATTTGGGACCTTCACATATGATTATGGCTACCATGTAAATAGCAATGGCTATGACAATGAGACCCTCAACATGGAATACCCTGTTGATGATTGCCAAATGGCAAGACACAACTGGGTGAATGATTTTGCATGTGACTTGTGGAACATGGATGAATGCTGCCAATTTAGTAACTTTAAAAAATAA 876 0.4167 MMSSSKSVSSSGSEDDNEIRRGPWTLEEDNLLTQSIANQGEGRWNLLAKCSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTKIQKQARHLKIDTDSREFEELVRRFWIPRLLQKARESSSSSALPIQNQATMPVSQYSAAAITPPPCVHPTCPNYLDQRLEQHSNGSCVSFSEPKLPQLLGYNSNHFGNGLDTDEFGTFTYDYGYHVNSNGYDNETLNMEYPVDDCQMARHNWVNDFACDLWNMDECCQFSNFKK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2505 291 SMART sant 73 121 IPR001005 -
Amo13g2505 291 SMART sant 20 70 IPR001005 -
Amo13g2505 291 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Amo13g2505 291 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g2505 291 CDD SANT 78 117 IPR001005 -
Amo13g2505 291 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Amo13g2505 291 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 262 - -
Amo13g2505 291 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Amo13g2505 291 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Amo13g2505 291 CDD SANT 23 68 IPR001005 -
Amo13g2505 291 Gene3D - 21 73 - -
Amo13g2505 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Amo13g2505 291 Gene3D - 77 120 - -
Amo13g2505 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Amo13g2505 291 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Amo13g2505 291 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 262 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2505 Amo-Chr13 45216818 45218283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2505 16 286 MYB Transcription Factor Family AT1G68320 47.119 3.69e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g2505 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2505 K09422 - gmx:778045 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2505 13 45216818 45218283 Amo03g1070 03 23406848 23408376 hybridization