Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2477 ATGAATAATTCCACATCAGAGAACCACAATACAGAATCCAAAGAAATGGGCAGCCCAAAGCCCATTTCTACTGGAATTTGTAAAAATGGTTTTATAGTCTCTATTCATGGCGAGGTTGAAGCGAAACATCGATTGCTTTTGGTTCAATGGATATCTACCCTTCTTCCTTCACTGAACTTACCGATAAATATCACGGACGATGTCTTAAGAGCATGCTTGAGGGATGGTATCGTTTTGTGTCAGATACTGAACAAGCTTCGTCCAGGTTCCGTCCCGGTGGTTAGTGAATTTGATCATGAAGAAAATCTAAAATCGTTTCTGAAAGCTATGGATGCATTGGGATTGCCTCAGTTTTCAATATCAGACCTGGAGAAGGGATCCATGAAGGTCGTTGTGGATTGCTTGTTATCACTCCGAGCAAAGAGTTTGCAGAATGTTTTCTGGGATAACAATTCTTCTACCACTAATTCCAAAGTAGGAAGCCCTCACGGGATTACAGCTCCCAGTGTTCCATTTCCACCATCATCCGAGACGACCACAAAGCACCATCGTTCCCTGAGTAGCCCATTCTTGACAGAGTCACCAACTTCATTACTGCACCAGGGTCACAAGTTCCACGAGGGATACGAGGTGTTTCAAGGGAAAGAAGAAAGTTACGCAGATCTTTCTCCAACAAAAATATCAGAAATGGTGAAATCAGTCAGTTTAGACAATGCTCCAACTCAGTCACTTCTGGGTGTTGTGAATGGTATTCTTGAAGAAACCGTTGAAAAACGAAACGGTGAAATGCCTTATCGCGTCGCCTGCTTGTTGAGAAAAGTTTCCCAGGAGCTTGAGCGCCGCATGTCAGCCCAAGCAGAACATTCAAGAACTCAAAGCAATCTTTTCAAGGTTCGTGAAGAAAAGTATCAATCCAGAATTAGAGCACTTGAGGCGCTTGCGGTTGGAAATAATATAGAAGAGGATGAGGCTGAGAAGTTCGCAGTGGAAGAAAATAAGCCTGATGACAGGGATTTTGAAAGGTCCATGAAAAAGCAGGAGGACAAAATTTTGGAAATTTCAGCATTGACCGAAGATTTAGAAACAAGAAAAAAAGCACTTGAATTAAAATGCTCACGATTAGAAGTAGAGGCTATGGAAGCTAAAGCAGAAATAGAACAGAAAACTAAAGCATATGAGCAGCAATTAGAAGAATGGCGCAATAAGTGTAAAGAGCTTGAGTCTTCTTATGTTTCAAAATATAACGAGTGGAACATGAAAAAGAACCAGATGCTAAACGTTGTAACTTTTCAATCTAGTAAGCTAGAGATAATGAAATTATCTTGGGAGTCCATTAAGCAAGATGTTATGCAAGAGCAAAAGGTTTATGCAGAGGAGTGTAATCAGTTAGGTGTAAATCTTAAATCACTGGCGCATGCAGCCGAGAACTATCAGGTTGTTGTGGCTGAAAATCGAAAATTGTTCAATGAAATCCAAGAATTAAAAGGAAACATCAGAGTGTATTGTCGCATTAAACCATTTACTGCTGGGGCCAAAGAAAAACAGTCCATTATAGAACACATTGGAGAGGATAATTTGGTTGTGGCAAATCCCTCTAAGCAAGGGAAAGATGCTCTCCGGTCATTCAAATTCAACAAGGTTTTCGGGCCTGACGCAACTCAAGCGGATGTATACGCCGACATACAGGCACTTACAAGATCAGTTCTTGATGGATATAATGTATGCATATTTGCTTACGGTCAAACTGGTTCAGGGAAAACTTACACAATGACTGGTCCAACCGGAGCAACTAGCGAGAATCTTGGTGTTAATTATCGGGCTCTGAATGATCTTTTCAGACTTTCCACGAGTAGAACGAGCTCCATTGAGTATGAGATCGGAGTTCAAATGGTTGAGATATACAATGAGCAATGTTGTTTCCTTGATTTGCACACACTTGGGATACTTACTCACTCGCAGCCAGAAGGATTGGCAGTGCCTGATGCAAGCATGTTCCATGTTAATGCGCCTTCAGATGTGATTAAGCTAATGGACATTGGACTGAAAAATAGAGCCATAAGCGCTACTGCAATGAATGAAAGAAGTAGCCGTTCACACAGTGTGGTGACGATTCATGTTCGAGGGAAAGATTTGAACTCGGGTTCTACACTGGTTGGTAATCTTCATTTGGTGGATTTGGCAGGAAGCGAAAGGGTAGATCGGTCTGAAGTAACCGGAGATAGGCTTAGGGAGGCACAACATATAAACAAATCACTGTCTGCATTTGGAGATGTGATCTTTTCCCTCTCCCAAAAGAGCTCTCATGTGCCATATAGAAACAGCAAGCTCACTCAGCTACTCCAAGCTTCTCTTGGTGGTCACGCAAAGACGCTCATGTTTATCCAAATCAACTCCGACGTGAATTCGTATTCCGAAACAATGAGTACTCTCAAGTTTGCTGAAAGGGTTTCTGGAATTGAGTTAGGAGCTGCACGAAGTAATAAAGAGAGCAAGGATGTGAAAGAATTAATGGAACAGGTGGCTTCTCTGAAGAACAGTGTGTCGAAAAAAGACGAGGAGATTGAGCGGCTACAATTACTTCACTTTAAGCAACTCCAAAGACCAAGCACAAGCAGAAGTCCGAGGGATGAATCTCTCCGACGAACGAAATCCTCTATTGGAGGAGACAAAACTCCTCGGGAAAGCTGGAGTTACACAGATGCAGACTTTGATGAAAGATCCAACAATAATTCTGATTATGGTTATGGTTCTGAAAGCTCAAAATCATCAGATAAGATGGACAAGTGA 2787 0.418 MNNSTSENHNTESKEMGSPKPISTGICKNGFIVSIHGEVEAKHRLLLVQWISTLLPSLNLPINITDDVLRACLRDGIVLCQILNKLRPGSVPVVSEFDHEENLKSFLKAMDALGLPQFSISDLEKGSMKVVVDCLLSLRAKSLQNVFWDNNSSTTNSKVGSPHGITAPSVPFPPSSETTTKHHRSLSSPFLTESPTSLLHQGHKFHEGYEVFQGKEESYADLSPTKISEMVKSVSLDNAPTQSLLGVVNGILEETVEKRNGEMPYRVACLLRKVSQELERRMSAQAEHSRTQSNLFKVREEKYQSRIRALEALAVGNNIEEDEAEKFAVEENKPDDRDFERSMKKQEDKILEISALTEDLETRKKALELKCSRLEVEAMEAKAEIEQKTKAYEQQLEEWRNKCKELESSYVSKYNEWNMKKNQMLNVVTFQSSKLEIMKLSWESIKQDVMQEQKVYAEECNQLGVNLKSLAHAAENYQVVVAENRKLFNEIQELKGNIRVYCRIKPFTAGAKEKQSIIEHIGEDNLVVANPSKQGKDALRSFKFNKVFGPDATQADVYADIQALTRSVLDGYNVCIFAYGQTGSGKTYTMTGPTGATSENLGVNYRALNDLFRLSTSRTSSIEYEIGVQMVEIYNEQCCFLDLHTLGILTHSQPEGLAVPDASMFHVNAPSDVIKLMDIGLKNRAISATAMNERSSRSHSVVTIHVRGKDLNSGSTLVGNLHLVDLAGSERVDRSEVTGDRLREAQHINKSLSAFGDVIFSLSQKSSHVPYRNSKLTQLLQASLGGHAKTLMFIQINSDVNSYSETMSTLKFAERVSGIELGAARSNKESKDVKELMEQVASLKNSVSKKDEEIERLQLLHFKQLQRPSTSRSPRDESLRRTKSSIGGDKTPRESWSYTDADFDERSNNNSDYGYGSESSKSSDKMDK* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2477 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 857 IPR027417 -
Amo13g2477 928 Coils Coil 357 416 - -
Amo13g2477 928 CDD CH 47 143 IPR001715 GO:0005515
Amo13g2477 928 Pfam Kinesin motor domain 503 818 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 MobiDBLite consensus disorder prediction 873 888 - -
Amo13g2477 928 MobiDBLite consensus disorder prediction 1 18 - -
Amo13g2477 928 Coils Coil 826 860 - -
Amo13g2477 928 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 4 327 - -
Amo13g2477 928 MobiDBLite consensus disorder prediction 155 191 - -
Amo13g2477 928 Gene3D Kinesin motor domain 439 821 IPR036961 -
Amo13g2477 928 MobiDBLite consensus disorder prediction 1 21 - -
Amo13g2477 928 PRINTS Kinesin heavy chain signature 571 592 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 PRINTS Kinesin heavy chain signature 720 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 PRINTS Kinesin heavy chain signature 689 706 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 PRINTS Kinesin heavy chain signature 769 790 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 MobiDBLite consensus disorder prediction 865 928 - -
Amo13g2477 928 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 345 877 - -
Amo13g2477 928 PANTHER KINESIN-LIKE PROTEIN KLP-3 345 877 - -
Amo13g2477 928 MobiDBLite consensus disorder prediction 171 191 - -
Amo13g2477 928 PANTHER KINESIN-LIKE PROTEIN KLP-3 4 327 - -
Amo13g2477 928 ProSiteProfiles Kinesin motor domain profile. 497 819 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 SMART ch_5 43 141 IPR001715 GO:0005515
Amo13g2477 928 Gene3D - 35 143 IPR036872 -
Amo13g2477 928 SMART kinesin_4 495 827 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo13g2477 928 Pfam Calponin homology (CH) domain 46 139 IPR001715 GO:0005515
Amo13g2477 928 SUPERFAMILY Calponin-homology domain, CH-domain 39 139 IPR036872 -
Amo13g2477 928 ProSiteProfiles Calponin homology (CH) domain profile. 41 143 IPR001715 GO:0005515
Amo13g2477 928 Gene3D - 336 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2477 Amo-Chr13 44613259 44618175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2477 386 853 Calmodulin-binding Proteins AT5G65930 34.874 1.05e-67 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2477 K10406 - jre:108983676 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2477 13 44613259 44618175 Amo03g1049 03 22901235 22905937 hybridization
Amo13g2477 13 44613259 44618175 Amo05g3990 05 107271425 107279380 PCT
Amo05g3990 05 107271425 107279380 Amo13g2477 13 44613259 44618175 PCT