Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2475 ATGAGCACAGGCATGAAAGACGCAGCTGCAACTGCAACAAGTGCAAGTGCCTTGGGTGCCAAGACGGCCAGGGCTTGCGACAGCTGCTTACGGAGGAGGGCACGGTGGTTCTGCGCTGCAGATGATGCATTCCTCTGCCATGCCTGTGACAACTTGGTCCACTCCGCGAACCAGTTAGCGAGCAGGCACGAGAGGGTTAGGCTTCAAACGGCGTCGTGCAAGCTCACCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCAAGAACACCGCGCCACAACAACAACAAGCACTTAGCCTTYCAACAAAGGCTTAAGGACCAAGTTTTATTCAACACCGCTTGTGTTCTTCCCGTTGTGCCGGAGCTTGGAGTTGAAGAAACAGCTCTTCTGGATGATCATGAGAGRGAGGAGCAGCTGCTGTGTCGCGTSCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATGTGTACAGTGAAGTCAGGGACGAGAAGAATCACGAAGAACGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTRGAAAKCCTGCTTGGAAGTGGGATTGATGAYGATTCATTAGGAATTGATTGCAAAGAAGAAGTTCAAAGAGAAGATGCATGCGTTAGAGCCGAAACCACCATTAATATTAAGGAGGGTGCAATGGTAATGGTAAAGGTGAAGGATGAGGAGCTTGATTCAGATACAGCAAGTCATCTTCAGTCAGTTTTTGACATCACAAACGATGACGAATTTGATTGGAATATCGAATCGGTGCTCTTATCGACGGAGGAAAAGGCGACCGCTGCCGCACCAGTAAGTAATAATAGTGATAGTGTTAGTGAAGAGAAAAAGAGGGACATATTTTTGAGACTGAACTATGAAGAGGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCGTGGACAACAGGAACCCCTCCTCCGTTCAACCCTCATGATCATTCCTGGCCAAATTTCTTGGATCCAAGTGGCGGAGATGTTCATCAGTGCTCTTCTTATGGGGATGGGAGAAGCGTGAGGGGACATGTTGGAGATGGGGGAAGAGAAGCAAGAGTATCTAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCTAAAAAGATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGATCATGCCTTGTTGGAGGAGCCACAACTTCCTTTCAAACCTCCTATAACTGA 1305 0.4782 MSTGMKDAAATATSASALGAKTARACDSCLRRRARWFCAADDAFLCHACDNLVHSANQLASRHERVRLQTASCKLTNKVTTAHAWHSGFTRKARTPRHNNNKHLAFQQRLKDQVLFNTACVLPVVPELGVEETALLDDHEREEQLLCRVPVFDPFDAELCNDVYSEVRDEKNHEERGCCDDLESFSEFLPSDMDLAEFAADVEXLLGSGIDDDSLGIDCKEEVQREDACVRAETTINIKEGAMVMVKVKDEELDSDTASHLQSVFDITNDDEFDWNIESVLLSTEEKATAAAPVSNNSDSVSEEKKRDIFLRLNYEEVINAWASQGSPWTTGTPPPFNPHDHSWPNFLDPSGGDVHQCSSYGDGRSVRGHVGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSCLVGGATTSFQTSYN* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2475 434 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 424 - -
Amo13g2475 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 13 424 - -
Amo13g2475 434 MobiDBLite consensus disorder prediction 326 349 - -
Amo13g2475 434 CDD Bbox1_BBX-like 25 68 - -
Amo13g2475 434 Pfam B-box zinc finger 23 66 IPR000315 GO:0008270
Amo13g2475 434 SMART bboxneu5 21 68 IPR000315 GO:0008270
Amo13g2475 434 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
Amo13g2475 434 Pfam CCT motif 376 418 IPR010402 GO:0005515
Amo13g2475 434 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2475 Amo-Chr13 44499266 44501182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2475 15 418 C2C2-CO-like Transcription Factor Family AT1G25440 45.070 9.55e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo13g2475 zf-B_box 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2475 - - adu:107478728 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2475 13 44499266 44501182 Amo03g1029 03 22251007 22252387 hybridization