Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2474 ATGATGAGAAACAATGTGCTGCAGCAGCAGCAGTTCAAAGATTCAGCTCTTAAGATGATCTCATTGTGCTCCCTAATTATTGTAGGTGTAGTTGAAACAAAATCAACAATAGAACCATGCAACTCCTCCCAGGCATGCCCCTCACTTCTCTCATACCTCTTGCCATGGGACTCAATGCTATCCGAAATAGCAACACGCTTCAACGTGAACGTCTCTGATATCATGGCCGCAAACTCTGCCTTCCCAATAACAGCATCGTGCGGCAACGAAATCGTGAGAGCAGGATCAACGGTGAAGATACCAGCCACGTGTGAGTGCGTGGATGGAATCAGAAGGTCGGTGTCAGCAGTGTACAAGGTGAAAGCATCGGACACACTGGAATCGATATCAGAGGGTTATGGAGGACTTGTTAGTGCAGATCAAATTGGGAGTTTCAACAAAGCCGTGCCTTTGGTGGATGGAGATGTGGTAGTTATACCGTTGCCGTGCAGTTGCATGAAGAACCAGAATAATGGGGAAAGTGCGGTTTATATGTCGTATGTGGTTCAGAAAGGGGAGACACTGGGAAGCGTGGCGGCTTATTTTGGTACAACTATTTCTGATTTGGAAACTGTTAACGGTCTTGGACAACCTACCGTTCTACCTGGCGATATTCTATCGATTCCTATACCAGCATGTTCATCAGCTACCCTGAATTGGTACAATGAGAGTTTAATAGTTCCAAATGGCTCATATGCTTTAACTGCCACCAACTGTATTAAATGCACTTGTGCTCCACAGGGTCTCAAGATGCAATGTTTTCCTTCTGGAATGGATGTACATTGCTATAATTTACGTTGCAAGGGTTCCAATCTTGCTATTGGGGATGAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTCTGATAAACTCTTCTTATCTGCAATGTCCGGCTACATGTTGGCAACCCTCAGCACCAAATTTGGCAGACCCATTTGTTTTGTCTCCAAGCCCAAGCCCAAGCCTATTCCCCTTGCCCTATAGCGTCTAA 1080 0.4556 MMRNNVLQQQQFKDSALKMISLCSLIIVGVVETKSTIEPCNSSQACPSLLSYLLPWDSMLSEIATRFNVNVSDIMAANSAFPITASCGNEIVRAGSTVKIPATCECVDGIRRSVSAVYKVKASDTLESISEGYGGLVSADQIGSFNKAVPLVDGDVVVIPLPCSCMKNQNNGESAVYMSYVVQKGETLGSVAAYFGTTISDLETVNGLGQPTVLPGDILSIPIPACSSATLNWYNESLIVPNGSYALTATNCIKCTCAPQGLKMQCFPSGMDVHCYNLRCKGSNLAIGDEHLEYSNAGCNVTQCVYRGHRGGKILSSLINSSYLQCPATCWQPSAPNLADPFVLSPSPSPSLFPLPYSV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2474 359 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 335 - -
Amo13g2474 359 CDD LysM 55 100 IPR018392 -
Amo13g2474 359 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 16 335 - -
Amo13g2474 359 CDD LysM 179 221 IPR018392 -
Amo13g2474 359 SMART LysM_2 117 160 IPR018392 -
Amo13g2474 359 SMART LysM_2 60 101 IPR018392 -
Amo13g2474 359 SMART LysM_2 179 222 IPR018392 -
Amo13g2474 359 Pfam LysM domain 118 148 IPR018392 -
Amo13g2474 359 Pfam LysM domain 60 101 IPR018392 -
Amo13g2474 359 Pfam LysM domain 180 222 IPR018392 -
Amo13g2474 359 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Amo13g2474 359 CDD LysM 117 159 IPR018392 -
Amo13g2474 359 Gene3D LysM domain 163 232 IPR036779 -
Amo13g2474 359 SUPERFAMILY LysM domain 178 223 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2474 Amo-Chr13 44494875 44497323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2474 34 352 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.636 9.20e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2474 - - aprc:113855794 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2474 13 44494875 44497323 Amo03g1025 03 22113640 22116087 hybridization