Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2455 ATGGACTTAGAAGAGAAATCCGTTTGTAAAGTTTCTGGTGTGCAAAGCCTCTCTTCCAGTGTGCAAAGTACTCCCGAAAAAAATGGCCATTCTGATGATGCTTCAAGAAGTTCAGAACTCCTTCAAGAGTTTGTGAAGGCTGGTCCGAAGAAGGAACTTCTTCCAACGTGCTTTGCTAAGGACCATAAGAAAGTTACTGCAAAAGGAAGGATGGCTGAAACTAAGTCAACTGGTAAGACAACTAAGAAACAAGATTCAAAAAAAGCTTCCAATGTTGGAAATCCGCCTTTCAGGAAGCAAAATCGGAAGGCTGAAAACCCCATGCGGATCTTTCCTAATCCAGACCAGACTTCTGAATCTGGACATACTAACTCTTGGATCTGCAAAAATGCTGCCTGTAGGGCTGTTCTATCTATAGATGACACATTTTGTAGACGGTGTTCTTGTTGTATTTGTCACCTTTTTGATGATAACAAAGATCCTAGTCTTTGGTTGGTATGCTTGTCTGAATCTACTCAAGGGGACTATTGTGGATTGTCTTGCCATATCGAGTGTGCTCTCAAACATGAAAAAGTAGGAGTCGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCATGTGGCAAAGTTACTGGGATACTTGAATGCTGGAAGAAACAGCTAACTATTGCAAAGGATGCTAGACGTGTAGATGCACTCTGTTACAGGATATATTTGAGCTACAGGCTCTTGGATGGGACTTTGAAATTTAAAGAATTGCATGAACTGGTACAAAAGGCGAAGGCTAAACTGGAGACAGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCACGAGGCATTGTCAGCAGACTCCCTATAGCTGGTGATGTGCAGAAATTCTGCACTCTTGCTATTGAGAAAGCTGAYAGATGGCTGGCTAGTGTTCCAAATGTGAATCCTGATTCCAGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCTGTCAAAATCATTTTACTTGAAGTATCAAATGTGGCGGCTGAGAACAGTAAGGGATACAAGCTTTGGTATTACAAGAGTAGGGAAGAATCACACACCAAAGATCCTGTTTCTGTGATTCCTAGATCACAGAGGAGGGTTTTGATATCCAACCTTCAGCCTTGTACAGAATATACTTTYCGCATTGTATCATATACGGATTCAGGAGACCTGGGTCATTCTGAGGCTAAATGTTTCACGAAGAGCATCGAGATAATTCAAAAYGTTCCTCCATCTGTTGCTATGGTACGAAAGAGAGAGAATTTTCAAATTGGGGCTTGTTCTTCTGGCTCGAAGATTGAGCCCAATCGCACTATGAAAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAATTTTGCATCTWGCTTGGGCTCAGGAACAAGGTTATCTTGAAGATWTTTGCTGTGCTGATATGAAAACGTGCTGTGGACAAAGTGAAATGGTCAAGCCTAAAACTCCAGAAGAGCAGTTGCCTTCAGTTCCACGAGGCCTTGATTTAAATGTTGTTTCAGTTCCRGATTTAAATGAAGAACTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGATGCAGGCTGTTGAGGCAGATGATGATGCTGCCTCTCATGATCTTGAGAAGAATGGTTTAGCAAGATCCCATGGGAGTGGTGATTCCCAAACCTGGACCCATCGCCCAACAGGGGAAGTGCCAGCTGTCGACTCTCGCATAGAYRTGACTAGAAAAAGGATAGCAAGCACGAATGAAGAGATACATGATTGTGACAGTACTTTGATAAATGGTTCTCCTGTACGCATATCTGATGGTTCATCTTCCCTGGATGAGAAYTTYGAGTATTGCGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATAAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTCTGAGGTCAACAGACCAAGAACGCAGGGTGGTTAACACCTTCGTTCAAACTCTCATTGATGATCCAAGCAGTTTGGCAGGGCAACTTGTTGACTCTTTTTATGACATTATATCCAACAAGAGGCCAAGAACTGGATTCTGTAATAAAGCTTTGGCATCAAACTAA 2160 0.4213 MDLEEKSVCKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFVKAGPKKELLPTCFAKDHKKVTAKGRMAETKSTGKTTKKQDSKKASNVGNPPFRKQNRKAENPMRIFPNPDQTSESGHTNSWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCLSESTQGDYCGLSCHIECALKHEKVGVVDHGQLMQLDGGYCCASCGKVTGILECWKKQLTIAKDARRVDALCYRIYLSYRLLDGTLKFKELHELVQKAKAKLETEVGPVNGVSAKMARGIVSRLPIAGDVQKFCTLAIEKADRWLASVPNVNPDSREGSLPAACKFVFEEVTASSVKIILLEVSNVAAENSKGYKLWYYKSREESHTKDPVSVIPRSQRRVLISNLQPCTEYTFRIVSYTDSGDLGHSEAKCFTKSIEIIQNVPPSVAMVRKRENFQIGACSSGSKIEPNRTMKDSGFKVRDLGKILHLAWAQEQGYLEDXCCADMKTCCGQSEMVKPKTPEEQLPSVPRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLMQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHRPTGEVPAVDSRIDXTRKRIASTNEEIHDCDSTLINGSPVRISDGSSSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTDQERRVVNTFVQTLIDDPSSLAGQLVDSFYDIISNKRPRTGFCNKALASN* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2455 719 MobiDBLite consensus disorder prediction 556 570 - -
Amo13g2455 719 Gene3D Immunoglobulins 314 417 IPR013783 -
Amo13g2455 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 56 715 IPR044514 GO:0010048|GO:0040029
Amo13g2455 719 MobiDBLite consensus disorder prediction 556 594 - -
Amo13g2455 719 Pfam Fibronectin type III domain 333 413 IPR003961 GO:0005515
Amo13g2455 719 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Amo13g2455 719 MobiDBLite consensus disorder prediction 1 46 - -
Amo13g2455 719 CDD FN3 332 411 IPR003961 GO:0005515
Amo13g2455 719 PANTHER VIN3-LIKE PROTEIN 1 56 715 - -
Amo13g2455 719 SUPERFAMILY Fibronectin type III 335 416 IPR036116 GO:0005515
Amo13g2455 719 MobiDBLite consensus disorder prediction 68 86 - -
Amo13g2455 719 MobiDBLite consensus disorder prediction 68 118 - -
Amo13g2455 719 MobiDBLite consensus disorder prediction 11 28 - -
Amo13g2455 719 CDD PHD_VIN3_plant 148 212 - -
Amo13g2455 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2455 Amo-Chr13 43555770 43561418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2455 124 710 PHD Gene Family AT3G24440 49.667 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2455 - - gmx:100780157 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2455 13 43555770 43561418 Amo13g2455 13 43555770 43561418 ECH
Amo13g2455 13 43555770 43561418 Amo05g3944 05 106468632 106471884 PCT
Amo05g3944 05 106468632 106471884 Amo13g2455 13 43555770 43561418 PCT