Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2448 ATGAAGAAGGAAAATCAAAACGTTTCCGTTGTAGCTGTCCTCACTGCATTGTTGTTTGCAGGCACATTGTCATCAGTGTGTGCCTCCAACTCCAAGCAAACAAGTTTCAGTGGCGAACTCAGCCATGTGGAAACCATGTACATCAAGCAGCGGCAGTTGCTCTACTACAGGGACGAGTTCGGTGACAGAGGAGAGAATGTCACTGTAGACCCTTCCCTGGTTTTTGAGAACCAGCGCATTAGGAACGCCTACATTGCCTTGCAAGCATGGAAGCAAGCCATTGTTTCCGATCCTCTGAACTTCACAGCAAACTGGGTAGGATCTGATGTGTGCAGCTACACTGGGGTCTACTGTGCACCCGCACTGGACAACCCTAAGATCCGCACCGTTGCTGGCATTGATCTGAACCATGCGGATATTGCTGGCTACTTACCGGAAGAGCTTGGTCTCTTGGTGGATCTTGCTCTCTTCCATATTAACTCAAACAGGTTCTGTGGCACATTACCGCACCGCTTCGATAGGCTCAAGCTCTTGTTCGAATTGGATCTCAGTAACAACCGCTTCGCCGGCAAGTTCCCTGCTGTCGTATTGAGACTCCCAACCCTCAAGTTCTTGGATCTGAGGTTCAACGAGTTCGAAGGTGGGGTTCCCAGAGAGCTCTTTGACAAAGATCTTGACGCCATTTTCATCAATCACAACAGGTTCGTCTTTGAAATTCCTGATAACTTGGGAAACTCGCCGGTTTCCGTTATTGTGTTGGCCAACAACAGGTTCCACGGTTGCATCCCTGCCAGCATTGGGAACATGTCGAACCTCAACGAGATCATTCTCATGAACAATGAGCTCAGAGCGTGCTTGCCTTCCGAGATTGGCTTGTTGAAGAACCTCACAGTCTTTGATATCAGCTTCAACCAGCTCTTGGGACCATTGCCGGACGCCATTGGAGGAGCTGTGAGCTTGGAGCAGTTAGACGTAGCGCACAACTTGCTCTCTGGGAACATTCCGGCCAGTATTTGCATGCTGCCACATCTTCAGAACTTCACTTATTCTTATAACTTCTTCACAGGGGAGCCGCCGGCGTGCCTGAGGCTGGCATCGTTTGATGACCGGACGAACTGCTTGCCGGGAAGGCCGTTGCAGAGATCCGCGGCCCAATGTAGGTCGTTCTTGTCTAAACCTGTGGACTGTAACTCGTTTGGATGCAAGCCATTTGTTCCTTCCCCTTCACATCCTTCGCCTCCTTCTTCACCTTCTTCACCTTCACCCTCACCCTCTTCACCGCCTTCTATTCCTTCACCTTCTCTGCCTTCTCCCTCTTCGCCACCGTCTACCCCTTCGCCTTCTCCCCCCAATGCACCTGGACAAGCTCCTCCTCCATCAACTCCTACTCCCATACCTTCTCCACCTAGAAGCGAACCTTCCCCAATTTATAGACCACCCTCTCCTCCCTCCACACCACCCTCTTTCCCTCCTATTAATACCCCGCCATCACCACCATCAACATCACCACCATCAACATCTCCACCTTACACTCCACATTCTCCTCCTCCGCCACCGCCTCTTTACTCTCCTCCATCGCCCCCGCCATCACCAATCTATACACCACCTTCACCCACGCAGCCAGCACCTCCATCTGAGCCTTCACCTAACCCAACCCCAACTCCACCATACTGTGTCCGGTCGCCACCGCCTCCGCCGCCAAATTCTCCATCAACACCGGCTCCTGAATTATCCCCGCCCCCACCTTCGCCTTATCATTATACCTCGCCGCCACCTCCCACTCACTCACCTCCGCCACCCACATATAACCAATCACCGCCACCTCCACCACCCTGCATAGAACCTCCTCCACCGCCACCACCTTCTCCCACACCTTATCTCCCACCACCATCCCCATCACCTCCACCTCCACCGGTTCAACATAATTCCCCGCGACCACATCATCCACCGGTCCACTATAGTTCACCACCACCGCCACCGGCACAATATAGTTCACCACCACCGCCACCGGCACAATATAGTTCTCCACCACCCCCTGTCCATTACAGTTCACCACCACCACCAACSCCTGTTCATTATAGTTCTCCGCCGCCACCAGCATCATCACCACCCTGCGAAGAAACTCCACCATCRCCGACCCCTTCCCCACCACCATCCCCTGTATATGAAGGGCCATTGCCACCTGTCGTCGGAGTCCCGTACTCTTCGCCTCCACCACCACCTTTCTATTAA 2232 0.5309 MKKENQNVSVVAVLTALLFAGTLSSVCASNSKQTSFSGELSHVETMYIKQRQLLYYRDEFGDRGENVTVDPSLVFENQRIRNAYIALQAWKQAIVSDPLNFTANWVGSDVCSYTGVYCAPALDNPKIRTVAGIDLNHADIAGYLPEELGLLVDLALFHINSNRFCGTLPHRFDRLKLLFELDLSNNRFAGKFPAVVLRLPTLKFLDLRFNEFEGGVPRELFDKDLDAIFINHNRFVFEIPDNLGNSPVSVIVLANNRFHGCIPASIGNMSNLNEIILMNNELRACLPSEIGLLKNLTVFDISFNQLLGPLPDAIGGAVSLEQLDVAHNLLSGNIPASICMLPHLQNFTYSYNFFTGEPPACLRLASFDDRTNCLPGRPLQRSAAQCRSFLSKPVDCNSFGCKPFVPSPSHPSPPSSPSSPSPSPSSPPSIPSPSLPSPSSPPSTPSPSPPNAPGQAPPPSTPTPIPSPPRSEPSPIYRPPSPPSTPPSFPPINTPPSPPSTSPPSTSPPYTPHSPPPPPPLYSPPSPPPSPIYTPPSPTQPAPPSEPSPNPTPTPPYCVRSPPPPPPNSPSTPAPELSPPPPSPYHYTSPPPPTHSPPPPTYNQSPPPPPPCIEPPPPPPPSPTPYLPPPSPSPPPPPVQHNSPRPHHPPVHYSSPPPPPAQYSSPPPPPAQYSSPPPPVHYSSPPPPTPVHYSSPPPPASSPPCEETPPSPTPSPPPSPVYEGPLPPVVGVPYSSPPPPPFY* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2448 743 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 448 - -
Amo13g2448 743 MobiDBLite consensus disorder prediction 406 743 - -
Amo13g2448 743 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 11 448 - -
Amo13g2448 743 Gene3D Ribonuclease Inhibitor 249 391 IPR032675 -
Amo13g2448 743 PRINTS Proline rich extensin signature 399 420 - -
Amo13g2448 743 PRINTS Proline rich extensin signature 437 454 - -
Amo13g2448 743 PRINTS Proline rich extensin signature 420 436 - -
Amo13g2448 743 PRINTS Proline rich extensin signature 462 487 - -
Amo13g2448 743 Gene3D Ribonuclease Inhibitor 83 248 IPR032675 -
Amo13g2448 743 Pfam Leucine rich repeat N-terminal domain 86 118 IPR013210 -
Amo13g2448 743 SUPERFAMILY L domain-like 83 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2448 Amo-Chr13 43226647 43229827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2448 34 401 Leucine-rich Repeat extension Gene Families AT4G13340 75.339 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2448 - - gmx:100814585 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2448 13 43226647 43229827 Amo13g2448 13 43226647 43229827 ECH
Amo13g2448 13 43226647 43229827 Amo03g0999 03 21436905 21439585 hybridization