Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2446 ATGGCAAACCCTTCCTCATCTTTCTCCTCCTCGTCTCAATTCACCTACTCCTCCGATCCCTCTTACTTCCCCACCCCCTTCCACCTTCAACAACCGCCTTACGCCCCACCCCTTCGTCCCCCTCCTCCCACCGTCGCTGCTGCCCCCGCTGCTGCCGCATACAGCTATCCTCCTCCACCGTCACACTACCACCAATTCCAGCGCGACGCCCAGACCATCGCCCCGGAGGCTCTCGAGAGCGTGAAGGCCGCCATAGCCAGCAGCGATGCAGTTCCCCACCGTGCCGCCGGGCAGACGTGGGAGGATCCCTCACTGGCCGAGTGGCCGGAGAACGACCATCGCTTGTTTTGCGGTGACCTAGGGAACGAGGTGAACAACGACGTTTTATCGAAGGCCTTCACAAGATTCCCTTCGTTTAACATGGCGAGAGTTGTGAGGGACAAGCGATCTGTTCTGTCAAGGGGAGGGGAGGCTGTACAGATGACTACTGACCATGAACCTAATACTGAGCGGGGCAGCATTGAGAACAGAGGTGGCTTTGTCTCAAACATGCTAGAAAAAAGAAACTTCTTTTGGAACAGAATGGACCACATGTTGCAAGAATCTCAGTTTACGAGGGGTGTGAGAGAGAGGTTGTTGAGGCTGGGAAGCAATCCAATGAGTTCTTGCAATAGTTATCTGCAGAAAGTTCCGGCTATTGTTCATGGAAACTTGAAGCTCTCCGAGAGCCATGCAATCCTATTATATCTTGCTTCTGCTTTTACTGGAATTGCTGACCATTGGTTAGTAGAACCATCTCATCTGCTTCTTCCTATGATGCCACCTTATGCAGCACTTTATTCACCTGGAGGGGTTTATACTCATCCTGCCATTCTTATTCTGAGAAACATGCAGGTGTTAAGTCTAGAAATCGGACCTTGTGGGAGAAACTATCTGAAAGGGTTTGAGGGGCTTGCAATGTCAATTGGGAATGGCCATACTGATAGTACAGAGCTTAGAACTGAAAACAAGCTGTCACAGAAGTTTGTGCTTGTGGATAACTACGTTTTTGATGATATGAACAGTGTGGATACTGGGGGTTCTAGTGATGGAAGTGATGGCAACACTGTGGGGGCTAATCAAACACCAAGAAAAAGAAGCTGTGAGAGAACACCAACCACTAGGTCTATGTTCTCACTCTGGGCATTTTTATTGAGGAACAAAAAGGCAAAGTTTTTTTGTGAGAAAAGCAGTGATGAAGAAGAAAAAGCAGCAGCAAAAAGAGCAAGTGAAGTGAATTTTGCAGATAAGATAAGTGGAATTAACACAGGACCTCCTTCACCAACTTCATCTATTAATTATTAG 1344 0.4829 MANPSSSFSSSSQFTYSSDPSYFPTPFHLQQPPYAPPLRPPPPTVAAAPAAAAYSYPPPPSHYHQFQRDAQTIAPEALESVKAAIASSDAVPHRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNNDVLSKAFTRFPSFNMARVVRDKRSVLSRGGEAVQMTTDHEPNTERGSIENRGGFVSNMLEKRNFFWNRMDHMLQESQFTRGVRERLLRLGSNPMSSCNSYLQKVPAIVHGNLKLSESHAILLYLASAFTGIADHWLVEPSHLLLPMMPPYAALYSPGGVYTHPAILILRNMQVLSLEIGPCGRNYLKGFEGLAMSIGNGHTDSTELRTENKLSQKFVLVDNYVFDDMNSVDTGGSSDGSDGNTVGANQTPRKRSCERTPTTRSMFSLWAFLLRNKKAKFFCEKSSDEEEKAAAKRASEVNFADKISGINTGPPSPTSSINY* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2446 447 PANTHER RNA-BINDING PROTEIN 42-LIKE 27 158 - -
Amo13g2446 447 MobiDBLite consensus disorder prediction 23 46 - -
Amo13g2446 447 MobiDBLite consensus disorder prediction 429 447 - -
Amo13g2446 447 MobiDBLite consensus disorder prediction 356 385 - -
Amo13g2446 447 SUPERFAMILY RNA-binding domain, RBD 96 155 IPR035979 GO:0003676
Amo13g2446 447 SUPERFAMILY Thioredoxin-like 226 254 IPR036249 -
Amo13g2446 447 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 158 - -
Amo13g2446 447 Gene3D - 61 169 IPR012677 -
Amo13g2446 447 MobiDBLite consensus disorder prediction 26 46 - -
Amo13g2446 447 MobiDBLite consensus disorder prediction 428 447 - -
Amo13g2446 447 Gene3D Glutaredoxin 216 260 - -
Amo13g2446 447 Pfam Glutathione S-transferase, N-terminal domain 226 251 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2446 Amo-Chr13 43151141 43155434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2446 261 386 bZIP Transcription Factor Family AT2G46270 35.374 1.03e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2446 K25079 - aip:110270111 241.891