Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2423 ATGGGGGAAGGAGAAGGAGGTGATTGCGCTTTGAGAAATGTGGCATCGGATGCACCTACGGTGCCGGTGCTGGTGCCGCCGTCGGATATTCCCGCCAAGAAGCTTGCAAGGCAGCTTGATTTCACCGGCTTAGCCGGGATGCCGGGCGGCGCGCCATTTCCAGAGAACTCGCAGTTGCGGCAGCAACAGCAACAACAGCTTCAGCCGCAAGTGGTGGCACAGTCACAGTCACGGTCACATCCGCAGACAATGACGCAGCCGATGGTAATGATGCCGATGCCGCATCCGCCGCAGGCGCCACGCCTTTCAACGAGGGTTGGTAAATCAGAATCTCCAAAACCAAGATCAAGGACCAATTTTGAAACAAAAGAAGCTACTCCAAAGAAGCAAAAGCAATGCAATTGTAAACACTCAAAGTGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATACTGTGATGGTTGCAACTGTGTAAATTGTTACAACAATGTTGATAATGAAGCAGCCAGACGAGAAGCTGTTGGAGCTACCTTAGAACGTAATCCAAATGCATTTAGGCCAAAGATTGCGAGCAGCCCTCATGGACCACATGACAACAGGGAGGATGCTGGCGAAGTTGTTATATTGGGAAAGCACAATAAGGGATGTCATTGTAAAAAGTCTGGCTGCCTCAAGAAGTACTGCGAGTGTTTCCAAGCCAACATTCTTTGTTCCGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCATTGTTCCATGGAGATCAAAATATCAACATGACATATATTCAGCAAGCAGCAAATGCTGCAATAACTGGTGCTATCGGTTCCTCTGGCTTTTCATCACCGCCAGTATCAAAGAAAAGAAAAGGTCAGGAACTCTCTTTTGTGCCAACAGCCAAGGATCCATCCATTGGAAAGCTAGGAAAACAGGCAAACCATGTCAAAGGTCCTTTACCCTCCTCCTCCTTTTCTCCTGCCCCTAGTACTCATGTTGGAACTGCAACATTAGGTCCTTCAAAATTTATATACCGGTCTGTATTGGCAGACATACTACAACCAGAGCACTTGAAGGAGCTTTGTTCAGTCCTAGTGCTACTATCTGGACAAGCCGCGAAGACAGTAACAGACCAGAAAAATATAATGCACAAACATATAGAAGATCAGACAGAAACTTCCCTTGCTTCTTCAACTCAACAACAGTTACCAAGCCAAAAGGGAACTAATGTTGAGAAAGCTACGTCTGGTGATTGTTCAAGTGAGAACCGAATAGATAAGGTCAGCCCAGATAATTCTAGTTCAGACGGTGTTGGTGTCCTCAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTAATGTGCGATGAGCATGATACAATGTTTATGACTGCTGTCTCTCCTAGTGAGCCAATTTCTCACACTTGTAACATATCTTCTCAATTGCCTTGTGGACAAAAAATGACTGAGTTATATGCAGAGCAAGAAAAGATTGTTTTGACAAAGTTCAGAGATTTTCTTAATAGAGTTATCACTATGGGAGAAATAAATGAAACAAAATATTCTTCATTAGCCAGAAGTGAATTGGAGAGTCATAGGGACCCAGTGGTCAATGGCACTGAAAATGCTAGAACTGAGACAGTAGATGAAGGAGCCACTAAAATTGGTGTTGCCAAAGCTGTTGTTCATCCTCTGGCGACAAGTAGGAATTTGACTAATTCAATATCTTTGGTCCATAGTAATCTTGTTCCTGAAAATGGTGAAAAAGAGGTATGA 1800 0.44 MGEGEGGDCALRNVASDAPTVPVLVPPSDIPAKKLARQLDFTGLAGMPGGAPFPENSQLRQQQQQQLQPQVVAQSQSRSHPQTMTQPMVMMPMPHPPQAPRLSTRVGKSESPKPRSRTNFETKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVDNEAARREAVGATLERNPNAFRPKIASSPHGPHDNREDAGEVVILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNINMTYIQQAANAAITGAIGSSGFSSPPVSKKRKGQELSFVPTAKDPSIGKLGKQANHVKGPLPSSSFSPAPSTHVGTATLGPSKFIYRSVLADILQPEHLKELCSVLVLLSGQAAKTVTDQKNIMHKHIEDQTETSLASSTQQQLPSQKGTNVEKATSGDCSSENRIDKVSPDNSSSDGVGVLKGRPMSPGTLALMCDEHDTMFMTAVSPSEPISHTCNISSQLPCGQKMTELYAEQEKIVLTKFRDFLNRVITMGEINETKYSSLARSELESHRDPVVNGTENARTETVDEGATKIGVAKAVVHPLATSRNLTNSISLVHSNLVPENGEKEV* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2423 599 MobiDBLite consensus disorder prediction 397 452 - -
Amo13g2423 599 SMART CXC_2 213 254 IPR033467 -
Amo13g2423 599 SMART CXC_2 128 168 IPR033467 -
Amo13g2423 599 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 86 572 - -
Amo13g2423 599 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 28 99 - -
Amo13g2423 599 PANTHER TESMIN/TSO1-RELATED 28 99 IPR028307 -
Amo13g2423 599 PANTHER TESMIN/TSO1-RELATED 86 572 IPR028307 -
Amo13g2423 599 MobiDBLite consensus disorder prediction 1 127 - -
Amo13g2423 599 MobiDBLite consensus disorder prediction 400 444 - -
Amo13g2423 599 MobiDBLite consensus disorder prediction 108 127 - -
Amo13g2423 599 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 130 165 IPR005172 -
Amo13g2423 599 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 216 250 IPR005172 -
Amo13g2423 599 MobiDBLite consensus disorder prediction 55 86 - -
Amo13g2423 599 ProSiteProfiles CRC domain profile. 129 253 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2423 Amo-Chr13 42616293 42620961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2423 30 538 CPP Transcription Factor Family AT4G29000 55.224 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo13g2423 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2423 - - gmx:100777698 790.415