Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2413 ATGAATAGAGGAGGTGGTGTGGTTGAGCAAATGATGGGTTCCGGGAACCCTAACTGCTGGAACTCTCCTTCTTCTGATTTCTTGTCATACTCCTCCACTACTACTCCTTCTTCATACACCAACTTTCTTCTGAATCCACCACCACCTTCTAACTGGCATGAACATGAGCATGAGCATCCAGAGCTTCCCGGCGACTCATGGACTCACCTAATCATGAGTGGAGGAGTGGTGGGAGAAGAAGAGAATGGTAGAGGTATATGGCAGCATCATGCATCAGAAGAAAGGTCCGTAGAGAGCAGTTATGTGTACGGTGATGGAAGTGCAGGGAAACCTAACTGGTCTCACGCTTCCTCCACCCCATGTGTCACCTTCAACACCAGCATCTTGGACTTCTCCACCCAGCCCACGCTTCCTCCACCTCCACCTCCACCTCCATCTTCCGCCGAGTGCAATAGCATCGCAGGTGGTGGAGCATCGAAGAAAGCTAGGGTTCAACAGTCGACGTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATCGCAGCTCTCCATCAACTCGTTTCCCCATTTGGAAAGACTGACACTGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCTTACTTGGTCAATGGATCACCAAACATGAAACACCAAAATCCTGTTCAAGGAGAGAAGAGTTGTTTATTCCCTGAAGATCCCGGTCAGCTGCTGAATGAAAACTGCTTGAAGAAGAGGAAAGCAACTAGTCAGCAGGAGGGTTCCCAGCATCAAGAAGAAGCAAAGAAGGACCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGTCTCCTGCTTTTGGTGCTGGAGGATTTCGATAG 939 0.4846 MNRGGGVVEQMMGSGNPNCWNSPSSDFLSYSSTTTPSSYTNFLLNPPPPSNWHEHEHEHPELPGDSWTHLIMSGGVVGEEENGRGIWQHHASEERSVESSYVYGDGSAGKPNWSHASSTPCVTFNTSILDFSTQPTLPPPPPPPPSSAECNSIAGGGASKKARVQQSTFKVRKEKLGDRIAALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLVNGSPNMKHQNPVQGEKSCLFPEDPGQLLNENCLKKRKATSQQEGSQHQEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWSPAFGAGGFR* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2413 312 PANTHER OS05G0228400 PROTEIN 39 297 - -
Amo13g2413 312 Gene3D - 161 219 IPR036638 GO:0046983
Amo13g2413 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Amo13g2413 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 222 IPR036638 GO:0046983
Amo13g2413 312 MobiDBLite consensus disorder prediction 39 65 - -
Amo13g2413 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 297 - -
Amo13g2413 312 CDD bHLH_AtbHLH_like 168 217 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2413 Amo-Chr13 42077526 42081820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2413 143 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 70.175 1.05e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2413 - - aip:107630281 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2413 13 42077526 42081820 Amo03g0966 03 20789949 20794253 hybridization