Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2406 ATGATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGAGAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCGATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGGTTGAGAAAATTGTGGATGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTCAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAGGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGAAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCAGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTCAGAAGTGAATTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTATTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCAGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCGGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGTGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCCAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCGATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGTGAAAGTGGTTCCAGTAGAAGAGAGCGGCATGTCAGAGCAAACTGGGGTAGCTGGAGCTGAAAGTGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAACGACTCACAGGAGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCGTGAAGGAAATGCGATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTACAAACCTACTTGCTATGGGTGTGCAACTGCCCTGTATCTAAATCTCTCTTGCCTTGAAGAATTCAAGCCTATGATTGGTTCAGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACACTCTATAATCTTTCCACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAARTGGGTAGAGAGGAAATMGTGTCYTCTCCAGWAATCATAAGCACATTGGCYTCGATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTWGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCCTTGGTCTCAATATCGGTGAATGGGACGTCAAGAGGCAGAGAAAAATCTCAAAAGCTGTTGATGCTCTTCCGAGAGCAACGACAAGAAGAGCATTCCCCGTCCAAGCCACAAGGCCGACCAGAAACCAGCAATTCATCTATGCCTAAGCCTGAGATGAAACCACTATGCAAGTCTACATCTAGGAGAAAGGTGGGAAAGGCTTTAAGCTTTCTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAG 2286 0.4239 MMDVAELEENLFAASDAKLHGEMCRTLSAIYCKILRIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQVEKIVDELASTVFAIDPSEKQVGDDLIALLQQGRKLDNSNDSSELECFHQAATRLEITSSRAALTERRALKKLIERAQAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPQSLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGVKVVPVEESGMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDSQEKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALREGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEFKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQXGREEIVSSPXIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQEEHSPSKPQGRPETSNSSMPKPEMKPLCKSTSRRKVGKALSFLWKSKSYSVYQC* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2406 761 SUPERFAMILY RING/U-box 276 352 - -
Amo13g2406 761 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Amo13g2406 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Amo13g2406 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Amo13g2406 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 749 - -
Amo13g2406 761 MobiDBLite consensus disorder prediction 702 739 - -
Amo13g2406 761 Gene3D - 395 713 IPR011989 -
Amo13g2406 761 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Amo13g2406 761 Coils Coil 176 196 - -
Amo13g2406 761 PANTHER U BOX DOMAIN-CONTAINING 2 749 - -
Amo13g2406 761 SUPERFAMILY ARM repeat 422 705 IPR016024 -
Amo13g2406 761 CDD RING-Ubox_PUB 281 323 IPR045210 -
Amo13g2406 761 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2406 Amo-Chr13 41988892 41995402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2406 2 760 U-box Gene Family AT1G24330 65.161 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2406 - - adu:107478647 1288.86