Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2390 ATGAGAAGATGTTTTTGGCATCTTCATGGGAGTAGTTGCCAAAAAAAAAGCGATTCAGCAAGAAAAGCAGTTTGTCTAGTGAGAATGAAAATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTTTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACCTTCTACGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTGAACACTGCGGCAGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGCCGCTCGTCTTGGCTGCCTATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTAACATTGGCAGATGGGAATACACTGCAGTTTCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACGTTTTCATCAAGAAACCAGTTCTCCTGA 867 0.4902 MRRCFWHLHGSSCQKKSDSARKAVCLVRMKMAPLIMISSCFVWNLFMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGNTLQFLNVVPSSWRFGQTFSSRNQFS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2390 288 Gene3D - 192 288 IPR036749 -
Amo13g2390 288 PRINTS Expansin/Lol pI family signature 269 283 IPR007118 GO:0005576
Amo13g2390 288 PRINTS Expansin/Lol pI family signature 102 120 IPR007118 GO:0005576
Amo13g2390 288 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Amo13g2390 288 PRINTS Expansin/Lol pI family signature 175 191 IPR007118 GO:0005576
Amo13g2390 288 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Amo13g2390 288 PRINTS Expansin/Lol pI family signature 62 77 IPR007118 GO:0005576
Amo13g2390 288 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 202 283 IPR007117 -
Amo13g2390 288 Gene3D - 51 188 IPR036908 -
Amo13g2390 288 SUPERFAMILY Barwin-like endoglucanases 62 210 IPR036908 -
Amo13g2390 288 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 81 192 IPR007112 -
Amo13g2390 288 Pfam Lytic transglycolase 98 182 IPR009009 -
Amo13g2390 288 SUPERFAMILY PHL pollen allergen 189 283 IPR036749 -
Amo13g2390 288 Pfam Expansin C-terminal domain 193 272 IPR007117 -
Amo13g2390 288 PANTHER EXPANSIN-A12 37 288 - -
Amo13g2390 288 PANTHER EXPANSIN-A15 37 288 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 135 145 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 93 107 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 269 285 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 122 133 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 191 203 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 240 261 IPR002963 GO:0009664
Amo13g2390 288 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Amo13g2390 288 SMART dpbb_1 98 182 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2390 Amo-Chr13 41592369 41594888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2390 47 286 Expansin Gene Family AT3G15370 61.111 1.02e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2390 - - ahf:112735861 575.859