Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2376 ATGACCTGTTTACCTTTCATATTTGGTAGGAAGACAACTTCGGCACCAAAACGAGATCCAGATATTGATGAAGAACTTTCAGGCATTCAAAATGTGAGATTATATTCCTACAAGGAACTAAAACTTGCCTCTGACAATTTCAGTCCAAGCAATAAAATTGGGGAGGGTGGTTTTGGTTCTGTCTACAAGGGATTGTTAAAAGATGGAAAAGTTGCAGCTATAAAAGTTCTGTCAGATGAATCAAGACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGTTCTCGGAAATACAGCATGAAAATTTGGTTGAGTTATATGGTTGTTGTGTGGAAGGAAATCAGAGAATATTAGTCTACAATTACCTTGAGAACAACAGTCTTGCACAAACCCTTCTAGGTGGAGGTCACAGTAATACCTATTTTAATTGGCGAACTCGAACTCGGATATGCGTTGGGGTGGCTCGAGGTCTTGCCTTTCTTCATGAGGAAGTAACACCACATATTGTTCATAGGGATATAAAAGCAAGTAATATTCTCCTCGACAAGGACCTCTCACCCAAGATTTCAGATTTCGGTCTTGCAAAGCTTATTCCTTCGTACATGACTCATGTCAGCACACGAGTAGCGGGAACAATAGGTTATTTGGCACCGGAGTATGCAATCAGGGGGCAGCTGACACGGAAAGCAGATATTTACAGTTTTGGTGTCCTCATTGTGGAGATAGTCAGTGGGAGAAGTAATACAAACACACTGTTACCGAAAGGGAATCAGTATATTCTTGAAACGACATGGGAACTTTACGAGCGAAGGGAATTGATAGAGCTGGTGGATATATCACTAAACGGGGAATTTGACGCCGAGGAGGCTTGTAAGTTTCTCAAGATTGGCCTTCTTTGCACTCAGAGTAATCCGAAGATTCGACCATCCATGTCCTGTGTTGTCAAGATGCTCACAGGAGAAATGGATGTCGATGAAAGTAACCTAACAAAACCAGGCTTGATTTCAGATTTTATGGACCTTAATATTAGAGAACAAAATAGCAATGATATAAAGACTTCGTCTTCAAGTAAAGATACCACTATATCACTACCTGCTTCAGGTGCGGAAAATACAACGGTCACTGTGAATTATGATCAAAGCTTTTAA 1149 0.4047 MTCLPFIFGRKTTSAPKRDPDIDEELSGIQNVRLYSYKELKLASDNFSPSNKIGEGGFGSVYKGLLKDGKVAAIKVLSDESRQGVKEFLTEINVFSEIQHENLVELYGCCVEGNQRILVYNYLENNSLAQTLLGGGHSNTYFNWRTRTRICVGVARGLAFLHEEVTPHIVHRDIKASNILLDKDLSPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLIVEIVSGRSNTNTLLPKGNQYILETTWELYERRELIELVDISLNGEFDAEEACKFLKIGLLCTQSNPKIRPSMSCVVKMLTGEMDVDESNLTKPGLISDFMDLNIREQNSNDIKTSSSSKDTTISLPASGAENTTVTVNYDQSF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2376 382 CDD STKc_IRAK 53 320 - -
Amo13g2376 382 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 362 - -
Amo13g2376 382 PANTHER - 2 362 - -
Amo13g2376 382 ProSiteProfiles Protein kinase domain profile. 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2376 382 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
Amo13g2376 382 SMART serkin_6 47 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2376 382 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Amo13g2376 382 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Amo13g2376 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Amo13g2376 382 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g2376 382 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2376 Amo-Chr13 41291005 41296092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2376 17 366 Receptor kinase-like Gene Family AT1G56120 49.716 1.78e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g2376 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2376 - - gmx:100800503 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2376 13 41291005 41296092 Amo18g1813 18 40002574 40005133 PCT