Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2371 ATGGCTTCTAATCTTCCAACTATCGCTGCCGCAACGGCAAGGTCCGCTGCCACGACGACGTCGTTTCAGGAAAAACATCACCGTTCGGTCTTCGAGCTCTCACCTAGCGTCTTCGACTCTTGCTACTTTCTACCTTCTACTCACTCTTCGATTTACGAGCCCAACGACAATGATCGTCGCAACGRAGGCCTTGAAACGCCCTCAAACAACGTCGTCGCCGATGGTCCCCAAGACACCYTCGTTTCAGCGCCTAGGTGGACGTGCAACACCTGTAAGGCCCAATTCGATTCCCTCCAAGACCAGCGTTCGCATTTCAAATCTGATATTCATCGATTCAATGTGAAGCTGACAGTTGCGGGAAAGAATATTGTTAAGGAAGAGGATTTTGAGGTGTTGACATCTGAATTTGTCAAAGACTATGATGTTTCAAGCATATCAGGATCAGAGAGTGACAGCGACAGTGAAAATGAGTCTCAAAATCGCAATGAAGTGCGTGACAAATCAAGAGAAATTCTTAAACAAAAMCTATTTGTTGGTCTTCAATCAGGTCAAAGSGTTTCTCTCTGGAAGTGCTTGATTATGAATATGAGTGATGAGAATGGAAGTGCAGAGAACGAAGTGTGTGAGAGGTTGAAATCTCTGACTCTTGAGCCCAGGGATAATAGTCATTTGCGAATCGTACTGCTTGCATCTGGTGGACACTTTGCTGGTTGTGTCTTTGATGGTGATGCAGTTGTGGCTCACAAGACCTTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAGAAACAATCATCAAAAGATGCTTCTGGAAGGGCTGCACATTCTGCTGGTGCTTCACTTCGTCGTCATAATGAACTTGCATTAAAAAAGGAAGTTCAAGAACTGCTTACTTCTTGGAGACCTTATTTTGATGCTTCCAAATGCATTTTTATAAATGCACCTTCAAGTAGTCGTCAATTGTTCTATAATGGAGAAAAATCACTCTTTTCCAATCCGCATTGTGCTATCAGAAATATTCCTTTCACTGTTCGAAGGCCTACTTTTAGGGAAGCAAAACGTGTATATAGCCAGTTGACTCAAGTATCCTTTGAAACGGATGAGAAGGAAACATTACAAAGCAACCAAGAGGGCTTAATATCAATTCCAACTGCTGTAAGAAATACAGACCRACTCTCCAGCAAAGGGGACATGATTGAGTTGGATAACAAAGATGAGGCTAAAGCTAGTTCAAGCAAAAAGGATGCACAACCTGTTTTGAGTGATGAAGAGAGTGAGAATGAGCTACCTGGCATATCAACTCCATTACATCAAGCAGCAAAATCTGGAGACGCTCACAACGTCATGGAACTCCTGGAACAGGGCTTGGATCCTTGCATTAAAGATGAAAGGGCGCGGACTCCATATATGTTGGCTAATGAGAAGGAAGTCAGAAATATTTTTAGAAGGTTCATGGCATCAAACCCTGACAAATGGGATTGGCATGCTGCAAAAGTTCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAACAGGCAGAAAAAGAAGCCAAGAGAAAAGCCAGAGCAAAAGAGTTAAAGAAACTAAAGAAAGCCAAAGAAAAGAGGGCACAGGCAGAAGCTGCGTTGCTTAAGAATGACTCGAAGGCTGCAGAGAAGCAAATGACTGCCCCAGCTTCTTCTAAGGGACAATCACAATCCAAAAGTGGTGTGAAATTATCTAAAGAGGAGGAAATAAGAAGAGCGCAGGCTGAAGAAAGGGAAAAGAGAGCAGCTGCCGCAGAGAGAAGAATAGCTGCCCTCAAAATTCAAGAGAACTGTTCAACCTCCACACATGCCATTTCAGAACCTAAAGGAGGATTAGCTGGTGAAATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGCTATAATTATAATTACTGCAGCACATCATGCATGCACGTACACAGGGAGTTCCTAGAAGATGGATGA 2001 0.4323 MASNLPTIAAATARSAATTTSFQEKHHRSVFELSPSVFDSCYFLPSTHSSIYEPNDNDRRNXGLETPSNNVVADGPQDTXVSAPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTVAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDSDSENESQNRNEVRDKSREILKQXLFVGLQSGQXVSLWKCLIMNMSDENGSAENEVCERLKSLTLEPRDNSHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKEVQELLTSWRPYFDASKCIFINAPSSSRQLFYNGEKSLFSNPHCAIRNIPFTVRRPTFREAKRVYSQLTQVSFETDEKETLQSNQEGLISIPTAVRNTDXLSSKGDMIELDNKDEAKASSSKKDAQPVLSDEESENELPGISTPLHQAAKSGDAHNVMELLEQGLDPCIKDERARTPYMLANEKEVRNIFRRFMASNPDKWDWHAAKVPSALTKEMEESQAAKQAEKEAKRKARAKELKKLKKAKEKRAQAEAALLKNDSKAAEKQMTAPASSKGQSQSKSGVKLSKEEEIRRAQAEEREKRAAAAERRIAALKIQENCSTSTHAISEPKGGLAGEIYCSCCNSSLAGKVPFHRYNYNYCSTSCMHVHREFLEDG* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2371 666 Gene3D - 426 545 IPR036770 -
Amo13g2371 666 MobiDBLite consensus disorder prediction 52 78 - -
Amo13g2371 666 SUPERFAMILY Ankyrin repeat 434 488 IPR036770 -
Amo13g2371 666 SUPERFAMILY beta-beta-alpha zinc fingers 76 118 IPR036236 -
Amo13g2371 666 Coils Coil 503 557 - -
Amo13g2371 666 Coils Coil 578 607 - -
Amo13g2371 666 Pfam Bacteroidetes VLRF1 release factor 226 365 IPR041175 -
Amo13g2371 666 ProSiteProfiles Ankyrin repeat region circular profile. 434 463 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 510 524 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 391 445 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 61 78 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 145 165 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 397 421 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 574 588 - -
Amo13g2371 666 MobiDBLite consensus disorder prediction 508 588 - -
Amo13g2371 666 ProSiteProfiles Ankyrin repeat profile. 434 463 IPR002110 GO:0005515
Amo13g2371 666 Pfam Vms1-associating treble clef domain 629 661 IPR041540 -
Amo13g2371 666 MobiDBLite consensus disorder prediction 556 573 - -
Amo13g2371 666 ProSitePatterns Zinc finger C2H2 type domain signature. 88 110 IPR013087 -
Amo13g2371 666 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2371 Amo-Chr13 41135986 41143445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2371 25 613 C2H2 Transcription Factor Family AT1G01930 54.801 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2371 K26089 - gmx:100527709 822.772